Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5725g00005 ATGACAAGACAGAAGATAGAAATAAAGAAGATCGATAACATAACTGCGAGGCAAGTGACGTTCTCAAAGAGAAGAAAAGGGCTATTCAAGAAAGCTCAGGAACTATCAACTCTCTGTGATGCTGAGATTGCTCTAATGGTCTTTTCTTCTACTGGGAAGCTCTTTGAATATGCTAGCTCAAGTGTGCAGCAGGTTATCGAAAGATATGATCAGCACTTACAAATTGAGAGATTATATCATTCATCTGTTTTGTATGAAAAGGAAACCTTCAGCATTCTCAGCAAGGAAGAAGCTAATAAGACTAAGGAATTGAGGCAGTTGAAGGGAGAAGAGCTTGAAGGATTGAACACAAAAGAATTAGAGAAGCTTGAGGACCAAATAAAAAGAGGTTTGAGCCGTGTTGTCAAAGCAAAGGATGAAATGATCATGAAAGAGATCAATGCCCTGAAGAGAAAGGGAATCCAGCTGATGCGAGAAAATCAGAGATTGAAACAGGTGAAGAATGTTGGAGAAGAACAAGGTCGTTCATCTGAGTCAACCAATAATGGCAGCACATCTGATCCTCCACGTGACGATGATAGTTCAGACACCTCTCTCAGATTGGGGTCAGTATAA 615 0.4016 MTRQKIEIKKIDNITARQVTFSKRRKGLFKKAQELSTLCDAEIALMVFSSTGKLFEYASSSVQQVIERYDQHLQIERLYHSSVLYEKETFSILSKEEANKTKELRQLKGEELEGLNTKELEKLEDQIKRGLSRVVKAKDEMIMKEINALKRKGIQLMRENQRLKQVKNVGEEQGRSSESTNNGSTSDPPRDDDSSDTSLRLGSV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5725g00005 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5725g00005 204 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Pral5725g00005 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5725g00005 204 Pfam K-box region 87 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00005 204 Coils Coil 120 140 - -
Pral5725g00005 204 FunFam Transcription factor, MADS-box 13 82 - -
Pral5725g00005 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5725g00005 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5725g00005 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5725g00005 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5725g00005 204 MobiDBLite consensus disorder prediction 172 188 - -
Pral5725g00005 204 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral5725g00005 204 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Pral5725g00005 204 MobiDBLite consensus disorder prediction 163 204 - -
Pral5725g00005 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Pral5725g00005 204 ProSiteProfiles K-box domain profile. 83 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00005 204 Coils Coil 146 166 - -
Pral5725g00005 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5725g00005 Pral-Chr5725 77269 106212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5725g00005 1 202 MADS-box Gene Family AT2G22540 49.362 9.99e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5725g00005 K-box 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5725g00005 - - qsu:112000287 219.935