Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5725g00001 ATGACAAGACAGAAGATAGAAATAAAGAAGATCGATAACATAACTGCGAGGCAAGTGACATTTTCAAAGAGAAGGAGAGGGTTATTCAAGAAGGCTCGAGAACTCTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCTTCCACTGGGAAGCTCTTCGAATATGCTAGCTCAAGTGTGCCGCAGGTTATCGAAAGATATGATCAGTACTCACAAATTGGGAGATTATATCATTCATCTGTTTTGTATGACAGGGACACTTTCAGCAAGCTCAGCAAGGAAGAAGCCAATAAGGTTCAGGAACTGAAGCAGTTGAAGGGAGAAGAGCTTGAAGGATTGAACATAAATGAATTACAGAAGCTTGAAGAGCAATTAGATAAAGGTTTGAAACGTGTAGTCAGAGCAAAGGATGACATAATGTTGAAAGAGATCGATGCGCTCAAAAGAAAGAGAATCCAATTGGTGGAAGAGAATCAGCTATTAAAACAGGTGAGGAATCCTTCACAAGAACAAGGAGGCCAGTCATCTGAGTCAGCCAACATTGGCAGCATATTTGATCCTCCGCATGATGATGATAGTTCAGACACTTCTCTCAGATTGGGATTGTCTTTATTTAAATGA 627 0.4035 MTRQKIEIKKIDNITARQVTFSKRRRGLFKKARELSTLCDAEIALIVFSSTGKLFEYASSSVPQVIERYDQYSQIGRLYHSSVLYDRDTFSKLSKEEANKVQELKQLKGEELEGLNINELQKLEEQLDKGLKRVVRAKDDIMLKEIDALKRKRIQLVEENQLLKQVRNPSQEQGGQSSESANIGSIFDPPHDDDSSDTSLRLGLSLFK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5725g00001 208 MobiDBLite consensus disorder prediction 165 208 - -
Pral5725g00001 208 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Pral5725g00001 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5725g00001 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5725g00001 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5725g00001 208 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pral5725g00001 208 Coils Coil 120 140 - -
Pral5725g00001 208 MobiDBLite consensus disorder prediction 165 184 - -
Pral5725g00001 208 ProSiteProfiles K-box domain profile. 83 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00001 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Pral5725g00001 208 Pfam K-box region 89 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00001 208 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral5725g00001 208 FunFam Transcription factor, MADS-box 13 82 - -
Pral5725g00001 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5725g00001 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5725g00001 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5725g00001 208 Coils Coil 146 166 - -
Pral5725g00001 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5725g00001 Pral-Chr5725 14561 22656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5725g00001 1 204 MADS-box Gene Family AT2G22540 47.458 2.01e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5725g00001 K-box 6.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5725g00001 - - rcu:8266867 197.208