Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5721g00039 ATGGGTTTTGCAGATCGAGAAGACGATGACTCACTCGGTATCGGCCCCAGGGTGATGCTTGCCGTCGCTTTCACGTTATTCGCCATCGTCTTCTTTGTAATCATTTTCCACTTCTGCTCCAGACGGCTCCGACGAAGTCGTCAGCTGAGCCTGAGCAGACGCTTCGGCGATCAACCGCCGGTTTATCAAATCAGTACTCAAGTTTTGCCGATTGATGTGGAATCACGTTGCCCAAACTGCGACCGTCAGGGGCTTGACTCTTCCGTCATAGCGTCGATTCCTAAACTCCAGTACAAGCAAACGGACCAGTTCAACGACGGCGAAACCGTAGAGTGCTCCGTTTGCTTAGCCATCATTGCGGAAGATGCAGCCGTTAGGGTTTTGCCTAACTGCAAGCACGTGTTTCATGTTGATTGTGTTGACACTTGGTTCGGTTCCAACAACACTTGCCCGATCTGCCGCACAGTGGCTGAACCCGCCTTGCTGTCTGGCGGTAGCACTGTTCAACCCTCGGCACCGCCAGTATGA 528 0.5284 MGFADREDDDSLGIGPRVMLAVAFTLFAIVFFVIIFHFCSRRLRRSRQLSLSRRFGDQPPVYQISTQVLPIDVESRCPNCDRQGLDSSVIASIPKLQYKQTDQFNDGETVECSVCLAIIAEDAAVRVLPNCKHVFHVDCVDTWFGSNNTCPICRTVAEPALLSGGSTVQPSAPPV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5721g00039 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 160 IPR013083 -
Pral5721g00039 175 Pfam Ring finger domain 111 154 IPR001841 -
Pral5721g00039 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 156 IPR044675 -
Pral5721g00039 175 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Pral5721g00039 175 SMART ring_2 112 153 IPR001841 -
Pral5721g00039 175 FunFam E3 ubiquitin-protein ligase ATL6 74 160 - -
Pral5721g00039 175 SUPERFAMILY RING/U-box 93 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5721g00039 Pral-Chr5721 216847 217374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5721g00039 14 159 C3H Transcription Factor Family AT2G42360 37.415 4.24e-26 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5721g00039 K19038 - gmx:100779105 180.259