Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5721g00011 ATGGGTTTGATCGATCTCAACACTACTGAGGACGACGAAACGCCGTCGTCGGGTTCCTCTGCTTCATTGTCCTCTCACTCCGGTAATAGCATTTCGGCCTCCACCTACCCTTCTCCTTCGTCCGTGTGCTTGGAGCTATGGCACGCGTGCGCGGGTCCAATGATTTCGCTACCAAAAAAAGGAAGCATCGTGGTTTACTTCCCACAGGGCCACCTTGAGCAGCAGGCTCAGGATCTTCCGGTCTCCGCTTACAATATCCCACCCCATGTTTTCTGTCGCGTTGCAGATGTTAAGCTCCATGCGGAGGAAGGTATAGACGAGGTGTACTGTCAGGTGTCGCTGGTTCCTGAAAGTGAGCAAGCTGAAAGAAGATTTCGGGAAGGTGAAATCGATGCTGACTGTGAAGATGAGGATGCTGCAGCTGCAGTGAAGTCTACAACGCCACATATGTTCTGCAAGACCCTGACAGCTTCTGATACTAGCACTCATGGGGGATTCTCTGTGCCTAGGCGTGCAGCTGAAGATTGCTTTCCTCCGCTGGATTACAATCAACAGCGTCCTTCGCAAGAACTTGTGGCAAAGGATCTGCATGGCCTGGAGTGGAAGTTCAGGCATATTTACAGGGGGCAGCCTCGCAGGCATTTGCTTACAACTGGTTGGAGTGCATTTGTAAACAAGAAGAAACTTGTGTCTGGAGATGCTGTACTGTTTCTGAGGGGTGAAGATGGAGTTCTGAGATTAGGGATTCGCAGGGCATCTCAGTTGAAATGTGGTGCTAACTTTTCAGTTCCCGCTGGCCTGCATCTTAATCCCAGCAGTTTCATGGATGTGGTCAATGCAATATCTGCAAGATGTGCCTTTAGCGTTTGCTATAATCCAAGGGTGAGCTCGTCAGAGTTCATAATTCCACTCAACAAATTTTTGAAGGGCCTTGATCAATTTTATTCAGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAACGAAGGTGCACAGGATTAGTTGTTGGAATTGGCGATGCAGATCCTGTTAGATGGCCCGGATCTAAATGGAGATGCCTTATGGTAAGGTGGGAAGATATGGAAGCCACTAGGCATAACAGGGTTTCCCCGTGGGAAATTGAGCCATCCGGTTCTGCTTCCTCTCCCAACAACTTCAATGCAGCTGGTTTAAAGAGGACCAGGATTGGTTTGCCTTCTTCAAAACAAGAATTTCCAGTTCCAAATGGGATTGGGACACCAGACTTTGGGGAATCATTGAGGTTCCAGAAGGTCTTGCAAGCAAGAAATTTTGGGTGTTAA 1314 0.4848 MGLIDLNTTEDDETPSSGSSASLSSHSGNSISASTYPSPSSVCLELWHACAGPMISLPKKGSIVVYFPQGHLEQQAQDLPVSAYNIPPHVFCRVADVKLHAEEGIDEVYCQVSLVPESEQAERRFREGEIDADCEDEDAAAAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGVLRLGIRRASQLKCGANFSVPAGLHLNPSSFMDVVNAISARCAFSVCYNPRVSSSEFIIPLNKFLKGLDQFYSAGMRFRMRFETEDAAERRCTGLVVGIGDADPVRWPGSKWRCLMVRWEDMEATRHNRVSPWEIEPSGSASSPNNFNAAGLKRTRIGLPSSKQEFPVPNGIGTPDFGESLRFQKVLQGXRNFGC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5721g00011 438 Gene3D - 149 252 IPR015300 -
Pral5721g00011 438 Gene3D - 315 387 - -
Pral5721g00011 438 FunFam Auxin response factor 149 253 - -
Pral5721g00011 438 SMART B3_2 151 253 IPR003340 GO:0003677
Pral5721g00011 438 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral5721g00011 438 FunFam Auxin response factor 314 385 - -
Pral5721g00011 438 SUPERFAMILY DNA-binding pseudobarrel domain 144 256 IPR015300 -
Pral5721g00011 438 CDD B3_DNA 149 251 IPR003340 GO:0003677
Pral5721g00011 438 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Pral5721g00011 438 MobiDBLite consensus disorder prediction 1 31 - -
Pral5721g00011 438 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Pral5721g00011 438 MobiDBLite consensus disorder prediction 9 31 - -
Pral5721g00011 438 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 404 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5721g00011 Pral-Chr5721 73878 79443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5721g00011 38 437 B3 DNA Binding Superfamily AT5G60450 54.146 3.25e-142 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral5721g00011 B3 3.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5721g00011 K14486 - gmx:100789906 679.863