Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5721g00001 ATGGAGGCCGAGTCTGTGTCTGACGGGGAGAATAATCGGAAAAGGGACGCCGCTGATGATTACAATGACAACAATAATGGAAGTAACAAAAAAATTGTAAATTCCAATGAAGGGCAGAGCAAGCCCAAGCGTCAGATGAAGACTCCTTTCCAGCTTGAGGCTCTGGAGAAAGCTTATGCTTTGGAGACTTACCCGTCGGAGGCGATGAGGGCAGAACTGTCGCAGAAGTTGGGGCTGTCGGATCGGCAATTGCAGATGTGGTTCTGCCATAGGAGGTTGAAAGACAAGAAGGACGTGCCCAAGTCTTCAAGAAAGGCGCCACCGCCGTTGCCCGCTTCACCGACGGACGAGTTGAGGATGGAGACTGAACTTGCCAATGATTATGGATCCGGGTCGGGTTCGGGCTCAAGCCCGTTTACTCGTTCAGAATTGCGGAATGTAGTACCTAGGGGTGTTCCTGGGTACTATGAGTCGCAGCAGGCTCTTATGGAGCTCAGAGCAATTGCTTGTGTGGAGGCGCAGTTAGGAGAACCCTTAAGGGAGGATGGACCTATTTTAGGAATTGAGTTTGATCCATTGCCGCCAGATGCATTTGGAGCACCTATCGCAGTTAATGAGCAGCAGAAGCGGCCTAGTCTTGGCTTTGATAGTAAAGTCTATGAAAGACACGATGTTAGAACAAACAAGGCTATGACAAGGGCCTTCCATGAATATCCATTTCTCCCAACCACTCCAGTATTAGATCTGATGCTTATGGACAATTGA 765 0.4915 MEAESVSDGENNRKRDAADDYNDNNNGSNKKIVNSNEGQSKPKRQMKTPFQLEALEKAYALETYPSEAMRAELSQKLGLSDRQLQMWFCHRRLKDKKDVPKSSRKAPPPLPASPTDELRMETELANDYGSGSGSGSSPFTRSELRNVVPRGVPGYYESQQALMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPIAVNEQQKRPSLGFDSKVYERHDVRTNKAMTRAFHEYPFLPTTPVLDLMLMDN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5721g00001 254 MobiDBLite consensus disorder prediction 1 21 - -
Pral5721g00001 254 Gene3D - 24 100 - -
Pral5721g00001 254 CDD homeodomain 43 97 IPR001356 GO:0003677
Pral5721g00001 254 MobiDBLite consensus disorder prediction 22 46 - -
Pral5721g00001 254 MobiDBLite consensus disorder prediction 1 49 - -
Pral5721g00001 254 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 245 IPR044977 GO:0006357
Pral5721g00001 254 SMART HOX_1 40 102 IPR001356 GO:0003677
Pral5721g00001 254 SUPERFAMILY Homeodomain-like 30 97 IPR009057 -
Pral5721g00001 254 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Pral5721g00001 254 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Pral5721g00001 254 MobiDBLite consensus disorder prediction 95 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5721g00001 Pral-Chr5721 326 3689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5721g00001 7 237 Homeobox Transcription Factor Family AT1G28420 49.802 6.13e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral5721g00001 Homeodomain 6.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5721g00001 - - lja:Lj6g3v2006670.1 337.035