LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5719g00043	ATGGGAGAGCCCGGTGGCCACATGTACGACCTCCTCAACCACGCCTCTGCCTCCTCCGGGGGCATCCGCAAGTCGCACCCTCCCCAGCCTTCTTCGCCTCGTATATTCAAGTGCCGTTACTGCCCCCGCATGTTCTGCACCTCCCAAGCCCTCGGCGGCCACCAGAACGCCCACAAGCGTGAGAGAGCCGCCGACCGCAACCTCAGCCCCACCTCCCAACCCCAACTCCACCACTCCCATTTCTTCGATCCCTACTGGCTCCGTGTTGAACCCGTTCCCGTCGCCGGGCCTCACCACCATCTTCCTCTTCCTCCCCCTCCTCCTCCTTCTCCCCCCAGGCCTGATCCTCACTTTGACCACGTCAACCACCTCGACCTCACCCTCCGCTTATGA	393	0.6336	MGEPGGHMYDLLNHASASSGGIRKSHPPQPSSPRIFKCRYCPRMFCTSQALGGHQNAHKRERAADRNLSPTSQPQLHHSHFFDPYWLRVEPVPVAGPHHHLPLPPPPPPSPPRPDPHFDHVNHLDLTLRL	130

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5719g00043	130	ProSitePatterns	Zinc finger C2H2 type domain signature.	38	58	IPR013087	-
	Pral5719g00043	130	MobiDBLite	consensus disorder prediction	96	119	-	-
	Pral5719g00043	130	ProSiteProfiles	Zinc finger C2H2 type domain profile.	36	63	IPR013087	-
	Pral5719g00043	130	Gene3D	Classic Zinc Finger	19	83	-	-
	Pral5719g00043	130	MobiDBLite	consensus disorder prediction	51	76	-	-
	Pral5719g00043	130	MobiDBLite	consensus disorder prediction	97	115	-	-
	Pral5719g00043	130	SUPERFAMILY	beta-beta-alpha zinc fingers	33	63	IPR036236	-
	Pral5719g00043	130	PANTHER	C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN	15	69	IPR044246	GO:0009788
	Pral5719g00043	130	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5719g00043	Pral-Chr5719	246088	246480	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5719g00043	30	66	C2H2 Transcription Factor Family	AT5G14010	78.378	6.08e-14	62.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Pral5719g00043		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5719g00043	-		-	pcin:129307163	166.777