Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5719g00028 ATGGAGGGAGAGATGCCACCCATAACTAACGTCGTACCTTGGATGGAAGGAAAAGTTGAACATGAAGAAGCCTCTTGGACCAGAACTAACAACGACGGTGAGCTCAAGGACGACGACATTGTGTTGGGTGGCCCTCTAACCTCTTTCAAATCCATGCTCGAAGGTGACTGGTACATGAACTCTGCTATCAATTTAGCTCACCAAGACCTCCTCGGTCTCCCGAATCCCCAAGAAACCACTGATATCGTCTTTTGTTCAAACCCGGCTGATAGTTTTCTAGTACAGCCAGTGGATTCGTCGTCTTCCTGCTCACCATCATTTACTCTTGACCCATCTCAGTCACAGCACTTGTTACAGCCCAAAACTTCTTTCCCTTCCCTCCTCAATGTCATTTGCGACAACCCTTTTGACAGTGGCTTCGATTTGAGCTCCGACGGTGGGTTCCTTGGTCCCCTCAGGGGAATTCATTCTTCGAATTCCCCTGTTGTGACGGATTTCTCGGGCTTGAATACTCAATCCCAGATGGGCAACCTGGAACTGAGTTCAAACTCTGAGTTTCTAGCTACTCGGCTGCTGCCAGCAGCTGACAATGCCGTCTCGTTAGGTGGCGGATTTTGTCCGGCAGGTTTCGGAGGGTTTGATAATCCGGGTGCTCTGTTGTTGAATCGTTCCAAGGTTTTGCGACCTCTTGAAGTTTCCCCTCCGGTGGGTGCGGCACCTACTCTGTTTCAGAAGCGAGCAGCACTCCGCAATACTTCCCTTGGAACTGATAGACTGGAAACTTTGGATATTTCAGCGTCGAGATTCGAAAACTGTTCTACAAGGTTGGAGAACATGGAGAGGAAGAGAAAGGGAGTCGAAGACAGCGAAATCGAGGAAGCTTCCATCGACGCATCAGGGCCGAACTATGATTCTGATGAGCTTAATGAGAATGGTAAGATGGGTGAGAATGCTTATAATGTGGCGAGCAATTCTAATGCCAATAGTTCTGTCACTGGTGGAGACCAGAAGGGGAAGAAAAGGGGGCAACCAGCGAAAAATCTGATGGCTGAGAGGCGGCGAAGAAAGAAACTAAATGATAGGTTGTACATGCTGAGGTCAGTTGTGCCGAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGACGCGATTGACTACCTGAAGGAGCTGCTGCAGCGGATTAACGATCTTCATAACGAGCTGGAGTCAACTCCACCTGGCTCATTGCCACCACCTTCTACAAGCTTTCACCCTTTGACGCCCACTCCACCAACACTTCCCTGTCGGGTCAAGGAAGAGCTTTGCCCTAGCTCCTTGTCAAGCCCTAAAAACCAAGCTGCAAAGGTGGAGGTTAGAGTAAGGGAAGGGAAGGCTGTCAACATCCATATGCTTTGTGGCCGCAGACCAGGTCTTTTGCTTTCCACCATGAGGGCTTTGGACAACCTTGGGTTGGATGTTCAGCAGGCCGTTATCAGCTGTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCGGAGAAGGGCTAGACGTGGTTCCTGAGCAAATCAAGGCAGTACTGTTGGATTCAGCTGGTTTCCATGGGATGATATGA 1602 0.4938 MEGEMPPITNVVPWMEGKVEHEEASWTRTNNDGELKDDDIVLGGPLTSFKSMLEGDWYMNSAINLAHQDLLGLPNPQETTDIVFCSNPADSFLVQPVDSSSSCSPSFTLDPSQSQHLLQPKTSFPSLLNVICDNPFDSGFDLSSDGGFLGPLRGIHSSNSPVVTDFSGLNTQSQMGNLELSSNSEFLATRLLPAADNAVSLGGGFCPAGFGGFDNPGALLLNRSKVLRPLEVSPPVGAAPTLFQKRAALRNTSLGTDRLETLDISASRFENCSTRLENMERKRKGVEDSEIEEASIDASGPNYDSDELNENGKMGENAYNVASNSNANSSVTGGDQKGKKRGQPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPPSTSFHPLTPTPPTLPCRVKEELCPSSLSSPKNQAAKVEVRVREGKAVNIHMLCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCGEGLDVVPEQIKAVLLDSAGFHGMI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5719g00028 533 CDD ACT_UUR-ACR-like 466 522 - -
Pral5719g00028 533 Gene3D - 335 405 IPR036638 GO:0046983
Pral5719g00028 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Pral5719g00028 533 MobiDBLite consensus disorder prediction 279 355 - -
Pral5719g00028 533 MobiDBLite consensus disorder prediction 339 355 - -
Pral5719g00028 533 Pfam Helix-loop-helix DNA-binding domain 347 391 IPR011598 GO:0046983
Pral5719g00028 533 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 253 529 - -
Pral5719g00028 533 Coils Coil 385 405 - -
Pral5719g00028 533 FunFam BHLH transcription factor 338 406 - -
Pral5719g00028 533 Coils Coil 269 289 - -
Pral5719g00028 533 CDD bHLH_AtAMS_like 345 416 - -
Pral5719g00028 533 SMART finulus 348 397 IPR011598 GO:0046983
Pral5719g00028 533 MobiDBLite consensus disorder prediction 316 336 - -
Pral5719g00028 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 413 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5719g00028 Pral-Chr5719 149101 153188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5719g00028 25 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.831 8.60e-148 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5719g00028 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5719g00028 - - pcin:129305251 890.567