Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5717g00001 ATGGAAATTCAATTCCAGCAGCCAAAGCAGCAACATCAGAAAGCAGGCATTCCAATCAGCAAAGTGGGGAAATTCAAAGGAAGAAACAGAAGCCGCGGCAACACAAACAAGTTTGTAGGGGTGAGGCAGAGGCCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAGGAGGCAGCCAGAGCTTATGATGAAGCTGCTTGCCTTCTTCGAGGAGCTAACACTCGCACCAACTTCATCACCCATGTCTCCTTGGATTCTCCTCTTGCTTCTCGGATCAGAAATCTGCTCAACAACAAAAAACCCGCAACTAAAAAACAACAACAACAAGAAGATCGTGTGGTAGCAGCCTCTGCCTCTAAAACCAGATGCACCAATACTAGCACTACTAGTACTCCTAGTATTAGGAGTAGTTCCAGCAATAGTGTTGACCACAGCGACACTTCTCTTTCCAGTGGGACAGTCCAAGATGCCTGTTTGTTTGATGATGTTTATAGACCAGATATGAGCAATTGCAAGGAGGAATTTGGGTTGGGTTCCACGTCCAATCTTTCATGGGGTGGTTTTGGACAGGTTTTTGATCGTTTTCCTTTTGCTCAGGTTTCAGATATTCCCAAGACTGATGGGGGTCTGTCCAATGTTGCTGACTTGGATCTTTTAGAATTTGAAAGGATGAAAGTTGAGAGGCAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAATGAAGCTCTGTGGGATCTTCCACCCTTGTGTTCATTGTTCTGTTAG 843 0.4496 MEIQFQQPKQQHQKAGIPISKVGKFKGRNRSRGNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITHVSLDSPLASRIRNLLNNKKPATKKQQQQEDRVVAASASKTRCTNTSTTSTPSIRSSSSNSVDHSDTSLSSGTVQDACLFDDVYRPDMSNCKEEFGLGSTSNLSWGGFGQVFDRFPFAQVSDIPKTDGGLSNVADLDLLEFERMKVERQISASLYAINGVQEYMETVQDSNEALWDLPPLCSLFC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5717g00001 280 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Pral5717g00001 280 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Pral5717g00001 280 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Pral5717g00001 280 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Pral5717g00001 280 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Pral5717g00001 280 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Pral5717g00001 280 MobiDBLite consensus disorder prediction 114 167 - -
Pral5717g00001 280 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Pral5717g00001 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 245 - -
Pral5717g00001 280 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Pral5717g00001 280 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5717g00001 Pral-Chr5717 1317 3776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5717g00001 24 280 AP2-EREBP Transcription Factor Family AT5G19790 45.247 1.82e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5717g00001 AP2 6.8e-14 CL0081