Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5715g00042 ATGAGCCCCCATATGATGGATTTGGCCCTGGATTTCCTGGTTCCGTCTTTGTGGGAGGTCAAAGTCACAGTGGCCACCTCCATGTTTGTGATAATCGCCTATTGGTTTTTCACGTACAGAACTGGAGACTTGGATGTTGATCGAGTACTTGTTGACAATTCCGCGGATGCTTCTGACGACAAAGACAAGATGGTCCAGTTTAGAGGAGATTCTCAGACCAATTCGGCATATTTGATTAAGTTGGAACTTTTGGCTGCTAAGAATCTTATTGGTGCAAATTTAAATGGCACGTCAGATCCTTATGCTATCATCACATGTGGCAATGAGAAGCGCTTCAGTTCCATGGTTCCTGGTTCAAGAAATCCTATGTGGGGTGAGGGATTCAATTTCTCTGTTGATGAACTTCCTGTCCAGATTAATATCACCATATATGATTGGGATATTATTTGGAAAAGTGCTGTTCTAGGTTCAGTGACTGTTCCAGTTGAAAGCGAAGGTCAAACTGGTGCAGTATGGTATACATTAGATAGCCCATCAGGGCAGGTTTGCCTTCACATCAAAACAAGAAAACTGTCTGCAAATTCTTCCAGCACTCGAAGAAGGATGCCTACAGAAAAGCAAGGGCCAACGGTTGTTCATCAAAAGCCAGGGCCTCTCCAGACAATATTTAATCTTCTTCCGGATGAGGTTGTTGAACATAGTTACTCTTGTGCACTTGAGAGGTCATTTTTGTATCATGGTCGTATGTATGTCTCAGCGTGGCATATTTGCTTCCATTCTAATGTGTTCTCCAAGCAAATGAAGGTGGTTATTCCATTTGAGGATATAGATGAGATTCGAAGGAGTCAGCATGCATTTATTAATCCTTCTATAACAATTATTCTTCGTATGGGTGCGGGTGGACATGGTGTGCCTCCTTTGGGAAGTCCTGATGGCAGAGTAAGATACAAATTTGCATCATTTTGGAATAGGAATCATACATTTAGAAATTTACAACGTGCAGCAAAGACTTTCCGTGAAATGCTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAATTGCGTGCACATAGCAGTTCTGTTAGGGGAAATAAGATACCAGATAAGGTTCCTGAAGAAAAAATGGGAAAAACTGGAACGTCTCAACCTTTTGTCAAAGAAGAGGCTTTAGTTGGTATATATAATGATGTTTTCCCTTCCAAGGCTGAGCAGTTCTTTAACTTGTTATTTAACAATGATTCAAAATTTACAAGCGAGTATCGTTCAGTACGAAAGGATACTAATCTAGTGATGGGACAGTGGCATACAGCAGATGAATACGATGGTCAGGTCAGAGAGATAACCTTCAGAACCCTTTGTAACAGTCCTATGTGCCCTCCAGACACTGCCATGACAGAGTGGCAACATGTTGTTCTATCGCCAGACAAGAAAAAATTGGTGTTTGAAACCGTCCAACAGGCACATGATGTACCATTTGGGTCCTATTTTGAGGTGCATTGTAAATGGAGTTTGGAGGCGATTAATGAAAGTTCAAGTACGTTGGACATAAAAGTGGGTGCGCACTTTAAGAAATGGTGTGTGATGCAATCTAAAATCAAGGCTGGGGCAATCAATGAGTACAAGAAAGAAGTTGATGTCATGTTAGAAGTTGCCCGATCTTATGTAAACAACAACGCTTCTGGTGGTGAGATTGACACGGCGGTTTCAACCCCCGCAACTTCTGACAACTCCTGA 1734 0.4193 MSPHMMDLALDFLVPSLWEVKVTVATSMFVIIAYWFFTYRTGDLDVDRVLVDNSADASDDKDKMVQFRGDSQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEGFNFSVDELPVQINITIYDWDIIWKSAVLGSVTVPVESEGQTGAVWYTLDSPSGQVCLHIKTRKLSANSSSTRRRMPTEKQGPTVVHQKPGPLQTIFNLLPDEVVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPSITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTFRNLQRAAKTFREMLEAEKKENAESELRAHSSSVRGNKIPDKVPEEKMGKTGTSQPFVKEEALVGIYNDVFPSKAEQFFNLLFNNDSKFTSEYRSVRKDTNLVMGQWHTADEYDGQVREITFRTLCNSPMCPPDTAMTEWQHVVLSPDKKKLVFETVQQAHDVPFGSYFEVHCKWSLEAINESSSTLDIKVGAHFKKWCVMQSKIKAGAINEYKKEVDVMLEVARSYVNNNASGGEIDTAVSTPATSDNS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5715g00042 577 Pfam VAD1 Analog of StAR-related lipid transfer domain 393 538 IPR031968 -
Pral5715g00042 577 Pfam C2 domain 80 175 IPR000008 -
Pral5715g00042 577 Gene3D - 218 337 IPR011993 -
Pral5715g00042 577 MobiDBLite consensus disorder prediction 194 213 - -
Pral5715g00042 577 Pfam GRAM domain 220 292 IPR004182 -
Pral5715g00042 577 ProSiteProfiles VASt domain profile. 389 559 IPR031968 -
Pral5715g00042 577 CDD PH-GRAM_C2-GRAM 228 336 - -
Pral5715g00042 577 ProSiteProfiles C2 domain profile. 59 175 IPR000008 -
Pral5715g00042 577 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 5 570 IPR044655 -
Pral5715g00042 577 Gene3D C2 domain 61 192 IPR035892 -
Pral5715g00042 577 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 77 187 IPR035892 -
Pral5715g00042 577 SMART gram2001c 217 283 IPR004182 -
Pral5715g00042 577 SMART C2_3c 78 174 IPR000008 -
Pral5715g00042 577 MobiDBLite consensus disorder prediction 349 380 - -
Pral5715g00042 577 CDD C2 79 175 - -
Pral5715g00042 577 FunFam BAG-associated GRAM protein 1 isoform X2 218 337 - -
Pral5715g00042 577 Coils Coil 328 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5715g00042 Pral-Chr5715 160256 171298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5715g00042 53 163 C2H2 Transcription Factor Family AT4G21160 24.324 5.86e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5715g00042 - - gmx:100813208 954.51