Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5715g00020 ATGGAACACGCTTCTTCTCATGAGGGAAAAGACAGTGGATACTGGAATTCTTCTCGAGCCCACGTAGAGGGATCAGCATCATTAGATGGTAGCACAAAAAATTCAATTTCAGAGGATACGCTTAGCACCTTCTCTGAGCTTGTAAATTTTGATACTTATGCTGGTTGGTACAATAGCTCATCAACCACAGATCAGGTTTTAGCTGATGGGCTTTCACCATATGCCTCGGTACCATACGCATCACTTGATGGATTCAATTTAATGGAGGAGAGCAGTGGGTCATTCTTGGCTAGCGTCGTTAATAAGAATTACAATGTGATAAGAAGTTCTCCCAACTCTGGAGAGAAAGTTGCATTTCAGCAAATGGATGCCCGACTTGAGTTCTCTGATGATGGAAATGATGATGGGAACTTAAACAATAAACATCATCTGAATGAAACTTTTGAAGAACTTAATAACTTAGTGATGGGCAATTGTATAGTTTCTAGGCCGCCTGGCTGGTCACTAGAGGAGAGAATGCTGAGGGCTTTGTCCCTTTTCAAGGAATCCGCTGGTGGGGGAATCTTGGCACAAGTTTGGGTACCAACAAAGCATGGAGATCAATTCATCTTAACCACAAGTGAGCAACCCTATTTGCTGGACCAAATGCTTGCAGGTTACCGTGAAGTGTCAAGGACATTTACATTCTCAGCAGAAGGAAGGCCAGGCTCTGTCTTAGGACTTCCTGGTCGTGTCTTTATCTCTAAAGCTCCTGAGTGGACGTCCAATGTTGGTTACTACACTAAAGCTGAATATTTGAGGATTGAGCATGCGGTTAATCATGAGGTTCGTGGATCAATTGCAGTTCCAGTGTTCGATCTTTACTCCGAAATGCCATGCTGTGCTGTGCTGGAACTTGTCACCACAAAGGAAAAGACTGATTTTGATAGAGAACTAGAAATTGTTTGCCAAGCACTCCAGGTTGTGAATTTAAGAACTACTGTGACTCGCCGACTTCTTCCCCAGAGTCTCTCAAATAACAAAAGAGCAGCTTTAATGGAGATCATTGATGTGTTACGGGCTGTGTGTCATGCACATAGTTTGCCTCTGGCATTGACATGGATTCCCTGTTGTTACTTGAAGGGAGTTGGCAATGAAACTATGAGAGTGCTAATTAAGGAGGGTCATTCAAGTTCTAGTGATAAATGTGTATTATGCATTGAAGAATCAGCTTGCTATGTTAATGATAGAATGATGGAAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGCACAGCTGGCAAAGCTATTCAGTCAAACCAGCCATTTTTCTATCCTGATGTCAAGGCATATGATGTTGGTGAATATCCGCTTGTTCAACATGCACGCAAGTACAATTTGAATGCTGCAGTTGCTATCAGGCTAAGGAGTACCTTCACTAATGATGATGATTACATTTTAGAATTTTTTCTACCTGTCAATATGAGAGGGAGTTCGGAGCAGCAACTTTTATTGGATAATCTCTCGGGCACCATGCAGAGAATTTGCAAGAGTTTGAGGACAGTTACTGATGCTGAATTATCAGGAATATCAGCGTCGCTGGTAAATCTTCAAAATGAAAAAGTACAAGATTTTTTGCCTATATCTAGGAGAAACTCTCAAATAGAATTGATGGATGGTGACAAGGACTCAGTCAGTAAGATTTCTTTGAAGGTTTGCAACTTGAGAAACAATGGAATTGAAGATGCTTATAACCAGGAAATGAATGGGTCAAAAAGGCAGGTTGAGAAAAAGAGAAGCACGGGTGAGAAGAATGTCAGCTTGAGTGTTCTCCAGCACTACTTTTCTGGTAGTCTAAAGGATGCCGCAAAGAGCATTGGTGTTTGTCCTACAACTCTGAAGCGGATATGCAGGCAACATGGCATTTCAAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGTTCATTAAAGAAAATCCAGACTGTGCTTGATTCTGTTCAGGGAGTAGAAGGAGGGCTAAAGTTCGACCCATCTGCTGGGGGTTTTGTGGCAGGAGGTTCAATCATTCAAGAATTTGATGCACACGGTCGTCTTTTGTTCTCTGAGAAGGGTATGCCCGTACAAGATCCTGAGGGTGTGACAAAATGCAGAGTCTCGGTGCCTACTGTACCGTGTAGTGAAGGAGAGAATTCGGCAATTAAGTTGGAAGATAATGATGTTTATTTGGCTAACCAGCTTGTGTGCTCACAAGGTTTAATTATTCCGAATTCAGGCGAGGGAGAATTGAAGAAAGCCAAAGGTTCTTTTGTTGATTGTAGTCAAGATTCAAAATCAATGGCCCTAGATAATGGATTGTGCCGGATGGTCAAGGCTCAGGGGTGTCCGGAGCAAGCATGTCTTGGGTCAGTTGCTACAAAAGATGGAAACGGATGGGGTCTGAACAAGGATGGTCAGGGAGCAAAAAGTTCTGGTCCTGATATTGTCTCTTGGAGTTCAAGCTCTCTGGTTGCTGATGAGATGGAAAATATTGTGGATAGGGACAATGGGATCGTTGAACACAGCCAACCTACTTCTTCAAACGTGACAGACTCATCCAATGGCTCTGGTTCAATGACCCACGGCAGTTCGTCTGGTGCTGAAAGCTTTGAGAATCAGAAGCCTTCCAAAGTAAAATCAACGCTTGTTGACAGCGGATCAAAAATTATTGTGAAAGCCACCTATAAAGATGATACTATACGTTTCAAGTTTGACCGATCTGCAGGTTGTTTCCAACTATACGAAGAAGTAGCGACAAGATTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTAGACGACGAAGAGGAATGGGTGATGTTGGTAAACGACTCGGACCTGCAAGAGTGCGTGGAGATATTGGAAGATATGGGCGCACGTAGTGTGAAGTTTCTTGTTCGTGATATGCCTTGCTTCTTAAGCAGCTCGGGTAGTAGCAGTTGCTTCTTGGGAGGCTCCTAG 2997 0.4278 MEHASSHEGKDSGYWNSSRAHVEGSASLDGSTKNSISEDTLSTFSELVNFDTYAGWYNSSSTTDQVLADGLSPYASVPYASLDGFNLMEESSGSFLASVVNKNYNVIRSSPNSGEKVAFQQMDARLEFSDDGNDDGNLNNKHHLNETFEELNNLVMGNCIVSRPPGWSLEERMLRALSLFKESAGGGILAQVWVPTKHGDQFILTTSEQPYLLDQMLAGYREVSRTFTFSAEGRPGSVLGLPGRVFISKAPEWTSNVGYYTKAEYLRIEHAVNHEVRGSIAVPVFDLYSEMPCCAVLELVTTKEKTDFDRELEIVCQALQVVNLRTTVTRRLLPQSLSNNKRAALMEIIDVLRAVCHAHSLPLALTWIPCCYLKGVGNETMRVLIKEGHSSSSDKCVLCIEESACYVNDRMMEGFVHACVEHHLEEGQGTAGKAIQSNQPFFYPDVKAYDVGEYPLVQHARKYNLNAAVAIRLRSTFTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICKSLRTVTDAELSGISASLVNLQNEKVQDFLPISRRNSQIELMDGDKDSVSKISLKVCNLRNNGIEDAYNQEMNGSKRQVEKKRSTGEKNVSLSVLQHYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSAGGFVAGGSIIQEFDAHGRLLFSEKGMPVQDPEGVTKCRVSVPTVPCSEGENSAIKLEDNDVYLANQLVCSQGLIIPNSGEGELKKAKGSFVDCSQDSKSMALDNGLCRMVKAQGCPEQACLGSVATKDGNGWGLNKDGQGAKSSGPDIVSWSSSSLVADEMENIVDRDNGIVEHSQPTSSNVTDSSNGSGSMTHGSSSGAESFENQKPSKVKSTLVDSGSKIIVKATYKDDTIRFKFDRSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECVEILEDMGARSVKFLVRDMPCFLSSSGSSSCFLGGS 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5715g00020 998 Pfam PB1 domain 902 980 IPR000270 GO:0005515
Pral5715g00020 998 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Pral5715g00020 998 MobiDBLite consensus disorder prediction 849 888 - -
Pral5715g00020 998 ProSiteProfiles PB1 domain profile. 899 981 IPR000270 GO:0005515
Pral5715g00020 998 SMART PB1_new 899 981 IPR000270 GO:0005515
Pral5715g00020 998 MobiDBLite consensus disorder prediction 850 888 - -
Pral5715g00020 998 Gene3D - 896 980 - -
Pral5715g00020 998 CDD PB1_NLP 900 980 IPR034891 -
Pral5715g00020 998 SUPERFAMILY CAD & PB1 domains 894 982 - -
Pral5715g00020 998 Pfam RWP-RK domain 603 651 IPR003035 -
Pral5715g00020 998 PANTHER PROTEIN NLP8 113 992 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5715g00020 Pral-Chr5715 67116 74376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5715g00020 25 996 NLP Transcription Factor Family AT2G43500 48.220 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pral5715g00020 PB1 1.1e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5715g00020 - - aprc:113864503 1298.88