Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5714g00043 | ATGTTGAGTTCTGTTATTAGTTTATTTATTTATTTTGGGGTCAAAGGACACACATTTGTCTTGAAAAAGAATAGAAGCTCAACGGTCCTAAGAAAATGGCGGGACAAACTGTACAGAACAAAAGTGCTCCAAACATTACAGTTCCATCGCATTATCTCCCCAAATATAGTACGCACAACCATCTCTCTCTGTGTGTGTCTGTCTCAATGCCTGCTCTCTCGTTTTAGAATTCCCATTTTCTCTGCTAGGAACAATGTTGGTCTTCCCATGGTTGTTATTGAAGTAATCCCCACCATCATCAGATCGTCGTCATCATATAATTTCCAAACTGCCGCCAACACTCTAGTGTCGTCCATGGGAAGCTGCATATCCACGCCGGGCAAGACATTCCCTCGCAGGAGGTCCAAGGAGAGCGTCAAGTCATGCATACCCAAATCTGGCTCTCACGCGCCGCCGCAGCAAAAAGCCCTCAACGTCGGCCCCATCAACGTCATCGAGGACCCGACCCCCGACAACATCTTTGAGAAGTTCGAGTTCGGCAAGGAACTTGGACGCGGCGAGTTCGGCGTGACACACAGATGCGTGGAGATTGAGACAGGGAAGGCGTTCGCGTGCAAGAAGATCGCCAAGACGAAGCTTCGCACGGAGATTGATATCCAAGATGTGAGGAGAGAGGTGCAGATCATGAGGCATTTGCCAAAGCATCCTAATATCGTGAGCTTCAAGGAAGCTTACGAGGACAAGGATGCCGTGTATCTCATCATGGAGCTTTGTGAAGGAGGCGAGCTTTTTGACAGAATTGTCGCTAAAGGCCATTACACAGAACGTGCCGCGGCTAATGTTATTAAGACAATTCTTGAGATTTGCAAGGTATGCCATGAGCATGGGGTGATACATAGGGACTTGAAGCCCGAAAATTTCTTATTTGGAGATGCAAGTGAGTCTGCTCCGGTGAAGGCAATTGATTTTGGGCTCTCCACCTTCTATGAATCAGGGCAGAGGTTTAATGAAATTGTCGGAAGTCCCTATTACATGGCTCCAGAAGTCTTGAGACGTAACTATGGACCAGAAATCGATGTGTGGAGCGCCGGCGTAATCCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCTGAGGAAGGAATAGCACAGGCGATCATCCGGGGAAACATCGATTTTGAAAGAGATCCTTGGCCTAAGGTTTCAGAAGAAGCAAAAAGCCTAGTTAAAAACATGCTTGATCCAAATCCATACAGCCGATTAACTAGTCAAGAAGTTCTTGAACATCCGTGGATACAGAACAGAGAACAGGGTCCAAATGTTTATCTAGGAGATCATGTACGAATGAGAATCAAGCAATTTTCCTTGATGAACAAGTTCAAGAAGAAAGTTCTTAGAGTGGTGGCAGACAGCCTTCCAACTGAGCAAATAGATCGGATCAAGCAGATGTTCCATATGATGGACAAGGATAAAAATGGAAACTTGTCGTTTGAAGAGCTCAAAGATGGTCTTTCTAGGATTGGACACCCTCTTCCTGACCCTGATGTGCAGATGTTATTGGACGCAATACAGATGGAAATGGCACGCTGA | 1599 | 0.4572 | MLSSVISLFIYFGVKGHTFVLKKNRSSTVLRKWRDKLYRTKVLQTLQFHRIISPNIVRTTISLCVCLSQCLLSRFRIPIFSARNNVGLPMVVIEVIPTIIRSSSSYNFQTAANTLVSSMGSCISTPGKTFPRRRSKESVKSCIPKSGSHAPPQQKALNVGPINVIEDPTPDNIFEKFEFGKELGRGEFGVTHRCVEIETGKAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPKHPNIVSFKEAYEDKDAVYLIMELCEGGELFDRIVAKGHYTERAAANVIKTILEICKVCHEHGVIHRDLKPENFLFGDASESAPVKAIDFGLSTFYESGQRFNEIVGSPYYMAPEVLRRNYGPEIDVWSAGVILYILLCGVPPFWAESEEGIAQAIIRGNIDFERDPWPKVSEEAKSLVKNMLDPNPYSRLTSQEVLEHPWIQNREQGPNVYLGDHVRMRIKQFSLMNKFKKKVLRVVADSLPTEQIDRIKQMFHMMDKDKNGNLSFEELKDGLSRIGHPLPDPDVQMLLDAIQMEMAR | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5714g00043 | 532 | Pfam | EF hand | 483 | 509 | IPR002048 | GO:0005509 | |
| Pral5714g00043 | 532 | ProSitePatterns | EF-hand calcium-binding domain. | 491 | 503 | IPR018247 | - | |
| Pral5714g00043 | 532 | FunFam | calcium-dependent protein kinase 13 | 263 | 443 | - | - | |
| Pral5714g00043 | 532 | SMART | efh_1 | 482 | 510 | IPR002048 | GO:0005509 | |
| Pral5714g00043 | 532 | SUPERFAMILY | Protein kinase-like (PK-like) | 162 | 446 | IPR011009 | - | |
| Pral5714g00043 | 532 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 172 | 523 | - | - | |
| Pral5714g00043 | 532 | Gene3D | Phosphorylase Kinase; domain 1 | 179 | 262 | - | - | |
| Pral5714g00043 | 532 | Gene3D | Transferase(Phosphotransferase) domain 1 | 263 | 444 | - | - | |
| Pral5714g00043 | 532 | FunFam | Calcium-dependent protein kinase 1 | 179 | 262 | - | - | |
| Pral5714g00043 | 532 | Pfam | Protein kinase domain | 177 | 435 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pral5714g00043 | 532 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 478 | 513 | IPR002048 | GO:0005509 | |
| Pral5714g00043 | 532 | CDD | EFh | 482 | 526 | IPR002048 | GO:0005509 | |
| Pral5714g00043 | 532 | CDD | STKc_CAMK | 176 | 434 | - | - | |
| Pral5714g00043 | 532 | ProSitePatterns | Protein kinases ATP-binding region signature. | 183 | 206 | IPR017441 | GO:0005524 | |
| Pral5714g00043 | 532 | SMART | serkin_6 | 177 | 435 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pral5714g00043 | 532 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 297 | 309 | IPR008271 | GO:0004672|GO:0006468 | |
| Pral5714g00043 | 532 | Gene3D | - | 445 | 529 | - | - | |
| Pral5714g00043 | 532 | SUPERFAMILY | EF-hand | 461 | 526 | IPR011992 | - | |
| Pral5714g00043 | 532 | ProSiteProfiles | Protein kinase domain profile. | 177 | 435 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5714g00043 | Pral-Chr5714 | 162686 | 165896 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5714g00043 | 119 | 529 | EF-hand Containing Proteins | AT2G31500 | 70.335 | 0.0 | 620 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CDPK | Pral5714g00043 | Pkinase | 7.2e-77 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5714g00043 | K13412 | - | gmx:100801716 | 661.759 |