Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5714g00033 ATGCTTGTTCGTAGGGTTCGCGCCATGGACTCAGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTAGATGATGATTACTACAGCGGTGAGACAGAGGATGTTCCTTTGGATTGCTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGTGATGAAGCTGACAAGATCAAGTCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGGAAAGACAGGAGGACGATATCACAAGAGTAGCGACCGTTCTTTTTATCTCACGAGTTGATGCAGCCATCTTACTTCGTCACTATAATTGGAATGTCAGCGAGGTGCATGAAGCTTGGTTTGCTAATGAAGAACATGTCCGAAGAACAGTTGGGTTATTGGAAAAGCCAGTTCTCCAGTTTCCTAATGCTAGGGAGCTTACCTGCGGCATCTGTTTTGAAACTTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCCTGTTGGGAAGGATATATTGGCACTGCTATTAATGATGGTCCGGGATGTTTGATGCTGCGTTGTCCTGATCCCTCTTGTGGTGCAGCTGTTGGTCAAAATATGATTGATCGATTAGCATCTCTTGAGGATAGGCAGAAGTATTCTCGTTACCTTCGTAGGTCTTATGTTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCGGATGGTGGAAATTATGATGTTGCTTGCCTCTGTTCTTATAACTTCTGCTGGAATTGCACAGAGGAGGCTCACCGAGCTGTGGATTGTGGTACTGTGTCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTACATGGTCGGAGCATGGTGAAAGGACTGGTGGTTTCTATGCCTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGTATGACGAAGCTGAAAGAAGAAGGGAAATGGCGAAGAATTCATTGGAAAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTTCATCAGATGCAAACAGTCCATCTTGAGAGGCTTAGCGACACACAGTGCCAACCTGAGTCACAGCTGAAGTTCATAACCGAGGCCTGGCTACAGATAGTAGAATGTAGGCGAGTGCTGAAGTGGACATATGCTTATGGTTACTATTTACCAGAGCATGAGCGTGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCAGAATTCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAGTTGCAGCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAACCAAGCTAGCTGGACTGACCAGTGTGACTAGGAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAATGAGCTCAAAAAATGCCGCCAGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAACCACTCGAACTAGCGGTTCCAGCAGAATGGCTGATAATAGTAATTGGTATTGTGAGCACTGTACCTATGCAAATACAGTGTCTGTTAACACATGCCAAATGTGCCATCTACAGCGGATCTTCCATGGAGGAATACCTCTCGCAAGCCCAGGACTAATTACATGTGAACAGAGTGAATGA 1854 0.4515 MLVRRVRAMDSEDDMHDANDVESLDDDYYSGETEDVPLDCYSDYDDDADDYFDDGDEADKIKSRRPEQNFTILKESDIQERQEDDITRVATVLFISRVDAAILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPVLQFPNARELTCGICFETYPCSRIESAACGHPYCISCWEGYIGTAINDGPGCLMLRCPDPSCGAAVGQNMIDRLASLEDRQKYSRYLRRSYVEDNKKTKWCPAPGCEYAVTFDADGGNYDVACLCSYNFCWNCTEEAHRAVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGTWSEHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLERLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKQFFEYLQGEAEFGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKAMSSKNAASSSKGRGGRGKGTTRTSGSSRMADNSNWYCEHCTYANTVSVNTCQMCHLQRIFHGGIPLASPGLITCEQSE 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5714g00033 617 Gene3D - 276 529 - -
Pral5714g00033 617 MobiDBLite consensus disorder prediction 533 567 - -
Pral5714g00033 617 MobiDBLite consensus disorder prediction 15 30 - -
Pral5714g00033 617 Coils Coil 357 384 - -
Pral5714g00033 617 SUPERFAMILY RING/U-box 217 285 - -
Pral5714g00033 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 228 IPR013083 -
Pral5714g00033 617 FunFam RBR-type E3 ubiquitin transferase 279 529 - -
Pral5714g00033 617 Pfam Ariadne domain 365 526 IPR045840 -
Pral5714g00033 617 Pfam IBR domain, a half RING-finger domain 216 278 IPR002867 GO:0008270
Pral5714g00033 617 Pfam IBR domain, a half RING-finger domain 295 342 IPR002867 GO:0008270
Pral5714g00033 617 ProSitePatterns Zinc finger RanBP2-type signature. 574 593 IPR001876 -
Pral5714g00033 617 CDD Rcat_RBR_ARI7-like 301 355 - -
Pral5714g00033 617 SMART ibrneu5 291 352 IPR002867 GO:0008270
Pral5714g00033 617 SMART ibrneu5 216 278 IPR002867 GO:0008270
Pral5714g00033 617 ProSiteProfiles Zinc finger RING-type profile. 147 191 IPR001841 -
Pral5714g00033 617 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 77 444 IPR031127 GO:0004842|GO:0016567
Pral5714g00033 617 SUPERFAMILY RING/U-box 297 345 - -
Pral5714g00033 617 CDD RING-HC_ARI6-like 144 205 - -
Pral5714g00033 617 SUPERFAMILY RING/U-box 143 225 - -
Pral5714g00033 617 SUPERFAMILY Ran binding protein zinc finger-like 570 597 IPR036443 -
Pral5714g00033 617 ProSiteProfiles TRIAD supradomain profile. 143 356 IPR044066 -
Pral5714g00033 617 FunFam RBR-type E3 ubiquitin transferase 141 230 - -
Pral5714g00033 617 CDD BRcat_RBR_ANKIB1 224 287 - -
Pral5714g00033 617 Gene3D - 568 604 - -
Pral5714g00033 617 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5714g00033 Pral-Chr5714 153312 161038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5714g00033 25 597 ARIADNE family AT1G65430 69.707 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5714g00033 K11968 - gmx:100810427 1014.99