Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5714g00032 ATGGATTGGAAGCCAAGTTTTTCACAAACAGTTGGCATCTCTCGTCGGGTTCGCGCCATGGACTCAGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTAGATGATGATTACTACAGCGGTGAGACAGAGGATGTTCCTTTGGATTGCTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGTGATGAAGCTGACAAGATCAAGTCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGGAAAGACAGGAGGACGATATCACAAGAGTAGCGACCGTTCTTTTTATCTCACGAGTTGATGCAGCCATCTTACTTCGTCACTATAATTGGAATGTCAGCGAGGTGCATGAAGCTTGGTTTGCTAATGAAGAACATGTCCGAAGAACAGTTGGGTTATTGGAAAAGCCAGTTCTCCAGTTTCCTAATGCTAGGGAGCTTACCTGCGGCATCTGTTTTGAAACTTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCCTGTTGGGAAGCTGTTGGTCAAAATATGATTGATCGATTAGCATCTCTTGAGGATAGGCAGAAGTATTCTCGTTACCTTCGTAGGTCTTATGTTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCGGATGGTGGAAATTATGATGTTGCTTGCCTCTGTTCTTATAACTTCTGCTGGAATTGCACAGAGGAGGCTCACCGAGCTGTGGATTGTGGTACTGTGTCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTACATGGTCGGAGCATGGTGAAAGGACTGGTGGTTTCTATGCCTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGTATGACGAAGCTGAAAGAAGAAGGGAAATGGCGAAGAATTCATTGGAAAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTTCATCAGATGCAAACAGTCCATCTTGAGAGGCTTAGCGACACACAGTGCCAACCTGAGTCACAGCTGAAGTTCATAACCGAGGCCTGGCTACAGATAGTAGAATGTAGGCGAGTGCTGAAGTGGACATATGCTTATGGTTACTATTTACCAGAGCATGAGCGTGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCAGAATTCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAGTTGCAGCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAACCAAGCTAGCTGGACTGACCAGTGTGACTAGGAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAATGAGCTCAAAAAATGCCGCCAGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAACCACTCGAACTAGCGGTTCCAGCAGAATGGCTGATAATAGTAATTGGTATTGTGAGCACTGTACCTATGCAAATACAGTGTCTGTTAACACATGCCAAATGTGCCATCTACAGCGGATCTTCCATGGAGGAATACCTCTCGCAAGCCCAGGACTAATTACATGTGAACAGAGTGAATGA 1812 0.4503 MDWKPSFSQTVGISRRVRAMDSEDDMHDANDVESLDDDYYSGETEDVPLDCYSDYDDDADDYFDDGDEADKIKSRRPEQNFTILKESDIQERQEDDITRVATVLFISRVDAAILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPVLQFPNARELTCGICFETYPCSRIESAACGHPYCISCWEAVGQNMIDRLASLEDRQKYSRYLRRSYVEDNKKTKWCPAPGCEYAVTFDADGGNYDVACLCSYNFCWNCTEEAHRAVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGTWSEHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLERLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKQFFEYLQGEAEFGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKAMSSKNAASSSKGRGGRGKGTTRTSGSSRMADNSNWYCEHCTYANTVSVNTCQMCHLQRIFHGGIPLASPGLITCEQSE 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5714g00032 603 CDD Rcat_RBR_ARI7-like 287 341 - -
Pral5714g00032 603 Pfam IBR domain, a half RING-finger domain 202 264 IPR002867 GO:0008270
Pral5714g00032 603 Pfam IBR domain, a half RING-finger domain 281 328 IPR002867 GO:0008270
Pral5714g00032 603 SUPERFAMILY RING/U-box 203 271 - -
Pral5714g00032 603 SUPERFAMILY RING/U-box 283 331 - -
Pral5714g00032 603 SUPERFAMILY RING/U-box 148 185 - -
Pral5714g00032 603 SUPERFAMILY Ran binding protein zinc finger-like 556 583 IPR036443 -
Pral5714g00032 603 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 430 IPR031127 GO:0004842|GO:0016567
Pral5714g00032 603 FunFam RBR-type E3 ubiquitin transferase 265 515 - -
Pral5714g00032 603 Gene3D - 262 515 - -
Pral5714g00032 603 CDD BRcat_RBR_ANKIB1 210 273 - -
Pral5714g00032 603 MobiDBLite consensus disorder prediction 1 51 - -
Pral5714g00032 603 MobiDBLite consensus disorder prediction 519 553 - -
Pral5714g00032 603 Gene3D - 554 590 - -
Pral5714g00032 603 ProSitePatterns Zinc finger RanBP2-type signature. 560 579 IPR001876 -
Pral5714g00032 603 Pfam Ariadne domain 351 512 IPR045840 -
Pral5714g00032 603 Coils Coil 343 370 - -
Pral5714g00032 603 SMART ibrneu5 202 264 IPR002867 GO:0008270
Pral5714g00032 603 SMART ibrneu5 277 338 IPR002867 GO:0008270
Pral5714g00032 603 ProSiteProfiles TRIAD supradomain profile. 154 342 IPR044066 -
Pral5714g00032 603 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5714g00032 Pral-Chr5714 153312 161038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5714g00032 36 583 ARIADNE family AT1G65430 65.921 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5714g00032 K11968 - gmx:100810427 947.577