Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5714g00031 ATGGATTGGAAGCCAAGTTTTTCACAAACAGTTGGCATCTCTCGTCGGGTTCGCGCCATGGACTCAGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTAGATGATGATTACTACAGCGGTGAGACAGAGGATGTTCCTTTGGATTGCTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGTGATGAAGCTGACAAGATCAAGTCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGGAAAGACAGGAGGACGATATCACAAGAGTAGCGACCGTTCTTTTTATCTCACGAGTTGATGCAGCCATCTTACTTCGTCACTATAATTGGAATGTCAGCGAGGTGCATGAAGCTTGGTTTGCTAATGAAGAACATGTCCGAAGAACAGTTGGGTTATTGGAAAAGCCAGTTCTCCAGTTTCCTAATGCTAGGGAGCTTACCTGCGGCATCTGTTTTGAAACTTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCCTGTTGGGAAGGATATATTGGCACTGCTATTAATGATGGTCCGGGATGTTTGATGCTGCGTTGTCCTGATCCCTCTTGTGGTGCAGCTGTTGGTCAAAATATGATTGATCGATTAGCATCTCTTGAGGATAGGCAGAAGTATTCTCGTTACCTTCGTAGGTCTTATGTTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCGGATGGTGGAAATTATGATGTTGCTTGCCTCTGTTCTTATAACTTCTGCTGGAATTGCACAGAGGAGGCTCACCGAGCTGTGGATTGTGGTACTGTGTCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTACATGGTCGGAGCATGGTGAAAGGACTGGTGGTTTCTATGCCTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGTATGACGAAGCTGAAAGAAGAAGGGAAATGGCGAAGAATTCATTGGAAAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTTCATCAGATGCAAACAGTCCATCTTGAGAGGCTTAGCGACACACAGTGCCAACCTGAGTCACAGCTGAAGTTCATAACCGAGGCCTGGCTACAGATAGTAGAATGTAGGCGAGTGCTGAAGTGGACATATGCTTATGGTTACTATTTACCAGAGCATGAGCGTGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCAGAATTCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAGTTGCAGCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAACCAAGCTAGCTGGACTGACCAGTGTGACTAGGAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAATGAGCTCAAAAAATGCCGCCAGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAACCACTCGAACTAGCGGTTCCAGCAGAATGGCTGATAATAGTAATTGGTATTGTGAGCACTGTACCTATGCAAATACAGTGTCTGTTAACACATGCCAAATGTGCCATCTACAGCGGATCTTCCATGGAGGAATACCTCTCGCAAGCCCAGGACTAATTACATGTGAACAGAGTGAATGA 1887 0.4515 MDWKPSFSQTVGISRRVRAMDSEDDMHDANDVESLDDDYYSGETEDVPLDCYSDYDDDADDYFDDGDEADKIKSRRPEQNFTILKESDIQERQEDDITRVATVLFISRVDAAILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPVLQFPNARELTCGICFETYPCSRIESAACGHPYCISCWEGYIGTAINDGPGCLMLRCPDPSCGAAVGQNMIDRLASLEDRQKYSRYLRRSYVEDNKKTKWCPAPGCEYAVTFDADGGNYDVACLCSYNFCWNCTEEAHRAVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGTWSEHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLERLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKQFFEYLQGEAEFGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKAMSSKNAASSSKGRGGRGKGTTRTSGSSRMADNSNWYCEHCTYANTVSVNTCQMCHLQRIFHGGIPLASPGLITCEQSE 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5714g00031 628 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 455 IPR031127 GO:0004842|GO:0016567
Pral5714g00031 628 ProSiteProfiles Zinc finger RING-type profile. 158 202 IPR001841 -
Pral5714g00031 628 Pfam Ariadne domain 376 537 IPR045840 -
Pral5714g00031 628 SUPERFAMILY RING/U-box 154 236 - -
Pral5714g00031 628 CDD Rcat_RBR_ARI7-like 312 366 - -
Pral5714g00031 628 Gene3D - 287 540 - -
Pral5714g00031 628 FunFam RBR-type E3 ubiquitin transferase 152 241 - -
Pral5714g00031 628 Gene3D - 579 615 - -
Pral5714g00031 628 Pfam IBR domain, a half RING-finger domain 227 289 IPR002867 GO:0008270
Pral5714g00031 628 Pfam IBR domain, a half RING-finger domain 306 353 IPR002867 GO:0008270
Pral5714g00031 628 MobiDBLite consensus disorder prediction 1 51 - -
Pral5714g00031 628 ProSitePatterns Zinc finger RanBP2-type signature. 585 604 IPR001876 -
Pral5714g00031 628 MobiDBLite consensus disorder prediction 544 578 - -
Pral5714g00031 628 Coils Coil 368 395 - -
Pral5714g00031 628 SUPERFAMILY Ran binding protein zinc finger-like 581 608 IPR036443 -
Pral5714g00031 628 FunFam RBR-type E3 ubiquitin transferase 290 540 - -
Pral5714g00031 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 238 IPR013083 -
Pral5714g00031 628 ProSiteProfiles TRIAD supradomain profile. 154 367 IPR044066 -
Pral5714g00031 628 CDD BRcat_RBR_ANKIB1 235 298 - -
Pral5714g00031 628 CDD RING-HC_ARI6-like 155 216 - -
Pral5714g00031 628 SMART ibrneu5 302 363 IPR002867 GO:0008270
Pral5714g00031 628 SMART ibrneu5 227 289 IPR002867 GO:0008270
Pral5714g00031 628 MobiDBLite consensus disorder prediction 26 51 - -
Pral5714g00031 628 SUPERFAMILY RING/U-box 228 296 - -
Pral5714g00031 628 SUPERFAMILY RING/U-box 308 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5714g00031 Pral-Chr5714 153312 161038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5714g00031 36 608 ARIADNE family AT1G65430 69.707 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5714g00031 K11968 - gmx:100810427 1014.99