Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5714g00030 ATGGACTCCGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTTGATGATGATTTCTACAGCGGTGAGACCGAGGATGTTCCTATGGATTACTACAGCGACTACGACGATGATGCTGATGATTACTTTGATGACGGCGATGAATCTGACAAGATTGAGTCTCGTCGGCCCGAGCAAAATTTTATCATCTTGAGGGAATCAGATATTCGGCAAAGACAAGAGGATGACATACTAAGAGTAGCGACTGTTCTTTTTATCTCGCCAGAGGCTGCAAGCATCTTACTTCGTCATTATAATTGGAATGTCAGTGAAGTGCATGAAGCATGGTTTGCTAATGAAGAGCATGTCCGAAGAACAGTTGGCTTACTGGAGAAGCCAGTTGTCCAGTTTCCTAACGCTACGGAACTTACTTGTGGCGTCTGTTTTGAAACTTATCCCTGTTCACGGATTAATTCTGCTGCTTGTGGTCATCCCTTCTGCATCCCATGCTGGGAAGCGTATATTGCCACGGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATCCCTCGTGTGGTGCTGCTGTTGGTCAAGATATGATTGATCGGCTAGCACCTGTTGAGGAGAAGCAGAAGTATTCTCGCTACCTTCTCAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAATATGCGGTTGCATTTGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCATCGTCCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATTCTTGCCAACTCCAAGCCCTGTCCCAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACGTGTACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGGGGTTTCTATGCTTGCAATCGCTATGAGGCAGCTAAACAAGAGGGAGTGTATGATGAGGCTGAAAGAAGAAGAGAGATGGCAAAGAACTCATTGGAGAGATACACACATTATTATGAGCGATGGGCTAGCAATCAATCATCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAGACTGTCCATCTTGAGAAGCTTAGCGACGCACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAGTGGACATATGCATATGGATACTATTTACCGGAGCATGAGCATGCTAAAAAACAATTTTTTGAGTACTTACAAGGTGAGGCAGAGTCCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAACAGTATCTCAATGCTGGTGGTCCATCTAAAGAGTTCAATGACTTCCGGACCAAGCTAGCTGGACTGACTAGTGTGACTAAAAACTACTTCGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATCTGATGTAGATAGTAATGGAGCTACTTCCAGCAAGGCAACGAGCTCCAAAAATGCTGCAGGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGATCCACACGAACCGGCAGTTCCAATAAAATGACGGATGATAATGTATTTTGA 1701 0.4533 MDSEDDMHDANDVESLDDDFYSGETEDVPMDYYSDYDDDADDYFDDGDESDKIESRRPEQNFIILRESDIRQRQEDDILRVATVLFISPEAASILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPVVQFPNATELTCGVCFETYPCSRINSAACGHPFCIPCWEAYIATAINDGPGCLMLRCPDPSCGAAVGQDMIDRLAPVEEKQKYSRYLLRSYVEDNKKTKWCPAPGCEYAVAFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDAQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLNAGGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDSNGATSSKATSSKNAAGSSKGRGGRGKGSTRTGSSNKMTDDNVF 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5714g00030 566 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Pral5714g00030 566 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Pral5714g00030 566 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Pral5714g00030 566 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Pral5714g00030 566 SUPERFAMILY RING/U-box 289 337 - -
Pral5714g00030 566 Coils Coil 349 376 - -
Pral5714g00030 566 CDD BRcat_RBR_ANKIB1 215 279 - -
Pral5714g00030 566 SUPERFAMILY RING/U-box 209 277 - -
Pral5714g00030 566 Gene3D - 266 521 - -
Pral5714g00030 566 MobiDBLite consensus disorder prediction 1 53 - -
Pral5714g00030 566 CDD Rcat_RBR_ARI7-like 293 347 - -
Pral5714g00030 566 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Pral5714g00030 566 MobiDBLite consensus disorder prediction 550 566 - -
Pral5714g00030 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 222 IPR013083 -
Pral5714g00030 566 SMART ibrneu5 274 344 IPR002867 GO:0008270
Pral5714g00030 566 SMART ibrneu5 208 270 IPR002867 GO:0008270
Pral5714g00030 566 MobiDBLite consensus disorder prediction 521 566 - -
Pral5714g00030 566 MobiDBLite consensus disorder prediction 1 48 - -
Pral5714g00030 566 MobiDBLite consensus disorder prediction 521 540 - -
Pral5714g00030 566 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Pral5714g00030 566 SUPERFAMILY RING/U-box 135 217 - -
Pral5714g00030 566 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Pral5714g00030 566 Pfam Ariadne domain 357 518 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5714g00030 Pral-Chr5714 144435 151852 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5714g00030 17 550 ARIADNE family AT1G65430 73.048 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5714g00030 K11968 - gmx:100810427 986.097