Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5714g00029 ATGGACTCCGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTTGATGATGATTTCTACAGCGGTGAGACCGAGGATGTTCCTATGGATTACTACAGCGACTACGACGATGATGCTGATGATTACTTTGATGACGGCGATGAATCTGACAAGATTGAGTCTCGTCGGCCCGAGCAAAATTTTATCATCTTGAGGGAATCAGATATTCGGCAAAGACAAGAGGATGACATACTAAGAGTAGCGACTGTTCTTTTTATCTCGCCAGAGGCTGCAAGCATCTTACTTCGTCATTATAATTGGAATGTCAGTGAAGTGCATGAAGCATGGTTTGCTAATGAAGAGCATGTCCGAAGAACAGTTGGCTTACTGGAGAAGCCAGTTGTCCAGTTTCCTAACGCTACGGAACTTACTTGTGGCGTCTGTTTTGAAACTTATCCCTGTTCACGGATTAATTCTGCTGCTTGTGGTCATCCCTTCTGCATCCCATGCTGGGAAGCGTATATTGCCACGGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATCCCTCGTGTGGTGCTGCTGTTGGTCAAGATATGATTGATCGGCTAGCACCTGTTGAGGAGAAGCAGAAGTATTCTCGCTACCTTCTCAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAATATGCGGTTGCATTTGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCATCGTCCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATTCTTGCCAACTCCAAGCCCTGTCCCAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACGTGTACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGGGGTTTCTATGCTTGCAATCGCTATGAGGCAGCTAAACAAGAGGGAGTGTATGATGAGGCTGAAAGAAGAAGAGAGATGGCAAAGAACTCATTGGAGAGATACACACATTATTATGAGCGATGGGCTAGCAATCAATCATCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAGACTGTCCATATAGTTGAATGTAGGCGAGTGCTGAAGTGGACATATGCATATGGATACTATTTACCGGAGCATGAGCATGCTAAAAAACAATTTTTTGAGTACTTACAAGGTGAGGCAGAGTCCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAACAGTATCTCAATGCTGGTGGTCCATCTAAAGAGTTCAATGACTTCCGGACCAAGCTAGCTGGACTGACTAGTGTGACTAAAAACTACTTCGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATCTGATGTAGATAGTAATGGAGCTACTTCCAGCAAGGCAACGAGCTCCAAAAATGCTGCAGGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGATCCACACGAACCGGCAGTTCCAATAAAATGACGGATGATAATGTATTTTGA 1629 0.4506 MDSEDDMHDANDVESLDDDFYSGETEDVPMDYYSDYDDDADDYFDDGDESDKIESRRPEQNFIILRESDIRQRQEDDILRVATVLFISPEAASILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPVVQFPNATELTCGVCFETYPCSRINSAACGHPFCIPCWEAYIATAINDGPGCLMLRCPDPSCGAAVGQDMIDRLAPVEEKQKYSRYLLRSYVEDNKKTKWCPAPGCEYAVAFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLNAGGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDSNGATSSKATSSKNAAGSSKGRGGRGKGSTRTGSSNKMTDDNVF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5714g00029 542 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Pral5714g00029 542 SUPERFAMILY RING/U-box 135 217 - -
Pral5714g00029 542 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 412 IPR031127 GO:0004842|GO:0016567
Pral5714g00029 542 Coils Coil 349 376 - -
Pral5714g00029 542 CDD BRcat_RBR_ANKIB1 215 279 - -
Pral5714g00029 542 SUPERFAMILY RING/U-box 289 337 - -
Pral5714g00029 542 MobiDBLite consensus disorder prediction 1 53 - -
Pral5714g00029 542 CDD Rcat_RBR_ARI7-like 293 347 - -
Pral5714g00029 542 SUPERFAMILY RING/U-box 209 277 - -
Pral5714g00029 542 MobiDBLite consensus disorder prediction 526 542 - -
Pral5714g00029 542 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Pral5714g00029 542 MobiDBLite consensus disorder prediction 497 542 - -
Pral5714g00029 542 SMART ibrneu5 274 344 IPR002867 GO:0008270
Pral5714g00029 542 SMART ibrneu5 208 270 IPR002867 GO:0008270
Pral5714g00029 542 MobiDBLite consensus disorder prediction 1 48 - -
Pral5714g00029 542 MobiDBLite consensus disorder prediction 497 516 - -
Pral5714g00029 542 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Pral5714g00029 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 223 IPR013083 -
Pral5714g00029 542 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Pral5714g00029 542 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Pral5714g00029 542 Gene3D - 266 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5714g00029 Pral-Chr5714 144434 151852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5714g00029 17 526 ARIADNE family AT1G65430 69.145 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5714g00029 K11968 - gmx:100810427 926.776