Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5714g00006 ATGGAGTCAGATCTTGAGCAACCCTCTTCAATGTTTCATGGTCAGCAGCAGCAGCAGATGAATTCTGGTTTGACACGGTATCGATCGGCGCCGAGCTCGTATTTTACGGATATTATAGACAAGGAATTTTATGAGGACATGTTCAATCGGCCTTCCAGCCCCGAAACGGAGCGGATTTTTTCACGGTTTATTAATAGTCTTGCTAATGAGTCAGAAGATGCACCGGCTCAATATCTTTCTGCTGCTCGACAAAATTCTGCGGTGAAGGAAGAGATGGATCAGCAGTCTCAAGTGATGCCTCCCGTAAACAGTGAACCGGTGGCTCTCCACCATCACCAGCCGCAGCAGCAGCAGAACAGTATTAGTAATTTTGTTTCTGCTCCGCAGAATCTTTTCCAAAGCTCGGGACGTCCACCTTTGCCGAATCAGAGCCTGACTTCATCAGCTACGGACGGAGCCTATCCTAGAGGAGGTCATCGAGTGCCACATATGAAGGCTCCTGATCCAAATAATTCCAGTCTAATCAGGCACAATAGCTCTCCTGCAGGACTCTTTTCCACCATAAACATTGAAAGCTATGCTATGAGAGGCACGGGCATATCGGGAGCTGGTAATAACGCAAGCGAAGAAGCAAACTTCTCTGCTGCGATGAGGATGAAAAATCCGCCAAAATACTCAACAGGCCTAATGTCTTCCATAGCTGAAGCTGGGGATAAAGGCAAAACAGAACAGAATCAAGACACTGAATCTTTTGCTGATAGCCAAGTTAATGAGTTCATCACAGGTTTCCCCGCAGGCTCTTGGGACGATTCTGCACTCATGTCTGACAATACTTCTGGACTAAAAAGATTTAGAGACGAGGACGCAAAAACTTTTTCGGGTCAGACTCAGAACGAGACGGGCAGCCAACCTCGTCCTTCTCCTCTGGCTCATCATCTCAGCTTGCCAAAAACTTCAGCGGAAATGGCAGCCATTGAAAAGTTTCTGCAGTTCTCAGATTCCGTTCCCTGTAAAATTCGTGCCAAGAGAGGCTGCGCCACTCACCCAAGAAGCATTGCCGAAAGGGTTAGAAGAACTAAGATCAGTGAGCGTATGAGGAAGCTGCAAGATCTGGTCCCCAACATGGACAAACAAACAAACACAGCAGACATGTTGGACTTGGCTGTCGACTACATTAAAGAACTTCAAAAGAAGGTTCAGACACTTTCAGACAGTCACGCAAAGTGCACGTGTCCACACAAGCAGGGGCAGTGA 1254 0.4729 MESDLEQPSSMFHGQQQQQMNSGLTRYRSAPSSYFTDIIDKEFYEDMFNRPSSPETERIFSRFINSLANESEDAPAQYLSAARQNSAVKEEMDQQSQVMPPVNSEPVALHHHQPQQQQNSISNFVSAPQNLFQSSGRPPLPNQSLTSSATDGAYPRGGHRVPHMKAPDPNNSSLIRHNSSPAGLFSTINIESYAMRGTGISGAGNNASEEANFSAAMRMKNPPKYSTGLMSSIAEAGDKGKTEQNQDTESFADSQVNEFITGFPAGSWDDSALMSDNTSGLKRFRDEDAKTFSGQTQNETGSQPRPSPLAHHLSLPKTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQKKVQTLSDSHAKCTCPHKQGQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5714g00006 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 395 IPR011598 GO:0046983
Pral5714g00006 417 MobiDBLite consensus disorder prediction 290 311 - -
Pral5714g00006 417 MobiDBLite consensus disorder prediction 129 151 - -
Pral5714g00006 417 FunFam Transcription factor bHLH130 family 346 414 - -
Pral5714g00006 417 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 79 411 - -
Pral5714g00006 417 Pfam Helix-loop-helix DNA-binding domain 350 396 IPR011598 GO:0046983
Pral5714g00006 417 MobiDBLite consensus disorder prediction 1 27 - -
Pral5714g00006 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 409 IPR036638 GO:0046983
Pral5714g00006 417 SMART finulus 351 401 IPR011598 GO:0046983
Pral5714g00006 417 MobiDBLite consensus disorder prediction 129 165 - -
Pral5714g00006 417 Gene3D - 346 414 IPR036638 GO:0046983
Pral5714g00006 417 MobiDBLite consensus disorder prediction 293 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5714g00006 Pral-Chr5714 39807 43259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5714g00006 1 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.930 1.15e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5714g00006 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5714g00006 - - qsa:O6P43_028130 508.064