Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5713g00005 ATGGGCTCAATGAACTCAAACAACTGGCTATCCTTCCCTCTTTCCCCTACTCAGTCTTCCTTACCTCCACAACTCCAAGCCACTCAATCCCATCAGTTTTCTCTTGGCTTAGTCAATGATTCCATGGAAAACCCTTTCCAAAACCACGATTGGAATCTGATGAATACACACGGAAGCAACGATGAAGTTCCAAAGGTTGCACAGTCTGGAATCAGTCAGAACTTTAATGAAATTCAGTCTTTGACATTATCCATGGGTAGTGGTAAGGATTCTACCTGTGAAACCAGTGGCGACAATAGTACTAATACTGCCGTCGAAGCTGCTGCACCCAGAAGAACTTTAGATACATTCGGTCAGCGAACATCAATCTATCGCGGTGTAACCAGACATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGACAATAGTTGTAGAAGGGAAGGGCAATCACGAAAGGGACGCCAAGTCTATTTGGGTGGATATGACAAAGAAGAGAAAGCAGCTAGGGCCTACGATTTAGCGGCACTAAAGTACTGGGGAACATCCACAACTACCAACTTTCCAATCAGTAACTACGAAAAGGAGCTGGAGGAGATGAAGCACATGACAAGACAAGAATTTGTGGCCGCCATACGAAGGAAGAGCAGTGGGTTCTCAAGGGGCGCATCAATGTATCGCGGAGTCACAAGGCATCATCAACATGGTAGATGGCAGGCAAGGATCGGTAGAGTTGCGGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAAGCTGCAGAAGCATACGACATAGCGGCGATCAAGTTCAGAGGACTAAACGCAGTGACAAACTTCGACATGAGCCGTTACGACGTGAAAGCCATACTTGAAAGCAACACGCTTCCAATCGGAGGAGGAGCTGCGAAACGACTGAAGGAAGCTCAGGCTCTGGAATGTTCCAGGAAGAGAGAGGAAATGATAGCGCTCGGATCGAGCTTTCAGTACGGCAGCGGCAGCGGAAGCGGCAGTTCTAGCAGGCTACAACTACAAGCCTACCCACTGATGCAGTTGGATCAGACGCAACCATTGTTAAGCCTGCAGAACCAGGAGATATCTCAGTACCCGTCACTTCATCATCCCAGTTATATCCAAACCCAGCTTCAGCTGCACCATCAAACTGCTTCTTCTAACTATAGCTTTCACCAGTCACCGAGTAATAACGCTCAGTTGTACAATAGCTATCTTCAGAACCACCCGGCTCTGCTTCAGGGTTTGATGAACATGGGTTCTTGTTCTTCTTCTGTGATGGACAATGACGGAGGGTCTAGTGGGAGTTACAGTGGAGGAGGGTATATGGGGATGGCTTCCAACACGACGTCGGGGGGATCCGCGGAGGAGCTGGCGCTGGTGAAGGTTGAAAACTACAACATGCCGTCCAGTGGTTACGGCGGCGGCTGGCCGTCGGAGTCCATGCAGGGATCCAATGCTGCTCTCTTTACTATGTGGAATGAATGA 1506 0.4847 MGSMNSNNWLSFPLSPTQSSLPPQLQATQSHQFSLGLVNDSMENPFQNHDWNLMNTHGSNDEVPKVAQSGISQNFNEIQSLTLSMGSGKDSTCETSGDNSTNTAVEAAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALECSRKREEMIALGSSFQYGSGSGSGSSSRLQLQAYPLMQLDQTQPLLSLQNQEISQYPSLHHPSYIQTQLQLHHQTASSNYSFHQSPSNNAQLYNSYLQNHPALLQGLMNMGSCSSSVMDNDGGSSGSYSGGGYMGMASNTTSGGSAEELALVKVENYNMPSSGYGGGWPSESMQGSNAALFTMWNE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5713g00005 501 CDD AP2 224 285 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 SMART rav1_2 225 289 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 SMART rav1_2 123 195 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 SUPERFAMILY DNA-binding domain 224 285 IPR016177 GO:0003677
Pral5713g00005 501 ProSiteProfiles AP2/ERF domain profile. 123 189 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 FunFam AP2-like ethylene-responsive transcription factor ANT 122 191 - -
Pral5713g00005 501 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 PRINTS Ethylene responsive element binding protein signature 265 285 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 378 - -
Pral5713g00005 501 ProSiteProfiles AP2/ERF domain profile. 225 283 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 Pfam AP2 domain 226 275 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 Pfam AP2 domain 123 181 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 CDD AP2 122 191 IPR001471 GO:0003700|GO:0006355
Pral5713g00005 501 Gene3D AP2/ERF domain 123 191 IPR036955 GO:0003700|GO:0006355
Pral5713g00005 501 Gene3D AP2/ERF domain 225 285 IPR036955 GO:0003700|GO:0006355
Pral5713g00005 501 FunFam AP2-like ethylene-responsive transcription factor 224 285 - -
Pral5713g00005 501 SUPERFAMILY DNA-binding domain 122 191 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5713g00005 Pral-Chr5713 22877 25735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5713g00005 4 501 AP2-EREBP Transcription Factor Family AT3G20840 60.678 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral5713g00005 AP2 8.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5713g00005 K09285 - pvy:116115844 714.916