Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5712g00005 ATGACCCATCCCTCCTGCCCCAATCATTTCAATGGTTCGTTTGACCTCAATTATCCTTATTATTCCCTTCTCCCTTCTTCTTCTTCTTCGCCTTGCACCAATCAGCCTTCCTATAATTTTGTTTCTGCTCAACAACATCACTGCATTAATGGCACCTCTCATATCTCTCCTCAGTGCTACCAATCCTTGCCGTCCTCCCCTCCCGTAAGGGAGCCCCTTCCTCTTCTTAACCTTGGCCCTTCCATTCCTCAAGATCCAGAATCTTCCTGCGCCCCCATGGAAATTGACGACAAGGACAAAGATTTGCATGACGGAGCTATGACGGTGGCTTTGCACTTGGGGCTTCCAAGCTTAGATTCAGCTGATTTAGTTTCAGATGTAGAACAAGTCACCGTCGCTTCTGCGCGTCCATCGAGTGGAGTGATCAGTAGGGGTCAGTACTGGATCCCTACCCCTGCTCAGATTCTGATTGGTCCGACGCAGTTCTCGTGCCCTCTTTGTTTCAAGACATTCAACAGATACAACAACATGCAGATGCACATGTGGGGCCATGGATCTGAATATAGAAAGGGGCCAGAGTCTCTAAGGGGGACGCAGCCAACAGCTATGCTGAGGCTGCCTTGCTATTGTTGCGCACCAGGATGCAAGAACAACATAGACCATCCAAAGGCTAAACCACTCAAAGACTTCCGAACCCTCCAAACCCATTACAAGCGTAAGCACGGAATGAAGCCTTTCATGTGTAGAAAATGCTGCAAAGCCTTTGCCGTGAGAGGTGATTGGAGGACTCATGAGAAGAATTGCGGCAAGCTCTGGTATTGCTCTTGCGGCTCTGATTTCAAGCACAAAAGATCTCTCAAAGATCATATCAATGCCTTTGGACATGGCCACACCGATTATGGCATTGATTCTTTTGATCGAGATGATATTGAACCTGCCTCTGAAATCGAACAAGAAAATGAGCCCTTCCGCTCCTAA 978 0.4785 MTHPSCPNHFNGSFDLNYPYYSLLPSSSSSPCTNQPSYNFVSAQQHHCINGTSHISPQCYQSLPSSPPVREPLPLLNLGPSIPQDPESSCAPMEIDDKDKDLHDGAMTVALHLGLPSLDSADLVSDVEQVTVASARPSSGVISRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPKAKPLKDFRTLQTHYKRKHGMKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHINAFGHGHTDYGIDSFDRDDIEPASEIEQENEPFRS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5712g00005 325 SUPERFAMILY beta-beta-alpha zinc fingers 158 185 IPR036236 -
Pral5712g00005 325 SUPERFAMILY beta-beta-alpha zinc fingers 228 266 IPR036236 -
Pral5712g00005 325 Gene3D Classic Zinc Finger 161 184 - -
Pral5712g00005 325 PANTHER ZINC FINGER PROTEIN WIP2 40 321 IPR043584 GO:0003700|GO:0010468
Pral5712g00005 325 FunFam Zinc finger protein WIP2 215 297 - -
Pral5712g00005 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
Pral5712g00005 325 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5712g00005 Pral-Chr5712 53253 55621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5712g00005 1 318 C2H2 Transcription Factor Family AT1G51220 57.391 5.64e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5712g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5712g00005 - - qsa:O6P43_000130 448.743