Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5712g00004 ATGAGTTGGAACACACACATGGAGGTCCACTGCAACAATATCAGTTACCCCTACAATACAGCAGGAAGCTTTATTGAATATTTTGAAGGTCTAACCTACGAACACGTCAATTTCATTTTTTCTGGTGCTTCACATTCTCAGGAGAGCTTGTACCCATCAACTACAAGTTTCTACAAGTTTGGCCTAGCTGAGCCTGAGAATACTTCATATTATCATTACAGTGATGGTTATGAGGTGAATAGTCATGACCGACGGGTGGATGAGCACAGAAGGCCTTTAGAGAACACATCAATATTTGGTGAACATGCTGCAGCAGAAAGTGCAGAATGGGGTGAAGGTGTGAACACCACTGCTCGAGACAATTCTGTTGAATGTCCAAGAAGACATCATCGTTCCCATGACTATCAGGTCACTTGGCAAGACAATATTGATCTTGACAACATGTCCTATGAGGAATTACTTGAGTTAGGGGAGGCTGTTGGAAGTCAAAACCGTGGTCTCTCCCAAGAACAGATCTCTTTGCTTCCAGTTTCAAAGTACAAGTGTGGGATTTTTTCACGCAAAAAATCACGGGATGAGAGATGTGTGATTTGCCAAATGGAATATAGGAGAGGGGAAAAACGGATCACCTTACCATGCAAACATGTCTATCATGCTGCGTGTGCAACAACATGGCTTAGCATCAACAAGGCTTGCCCTATATGTTACACGGAGGTGTTTGCTGATACATCAAAACGCAAATGA 744 0.4274 MSWNTHMEVHCNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHSQESLYPSTTSFYKFGLAEPENTSYYHYSDGYEVNSHDRRVDEHRRPLENTSIFGEHAAAESAEWGEGVNTTARDNSVECPRRHHRSHDYQVTWQDNIDLDNMSYEELLELGEAVGSQNRGLSQEQISLLPVSKYKCGIFSRKKSRDERCVICQMEYRRGEKRITLPCKHVYHAACATTWLSINKACPICYTEVFADTSKRK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5712g00004 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 241 IPR013083 -
Pral5712g00004 247 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
Pral5712g00004 247 ProSiteProfiles Zinc finger RING-type profile. 195 235 IPR001841 -
Pral5712g00004 247 Pfam Ring finger domain 194 235 IPR001841 -
Pral5712g00004 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pral5712g00004 247 SUPERFAMILY RING/U-box 188 243 - -
Pral5712g00004 247 SMART ring_2 195 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5712g00004 Pral-Chr5712 43340 48345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5712g00004 8 244 C3H Transcription Factor Family AT3G63530 42.623 9.72e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5712g00004 K19045 - gmx:100793907 414.461