Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5712g00002 ATGAGGAAGCCCGAGTCTGGAAAAAACAACACCAACAACAACAATAACAAGCTTAGGAAGGGGCTGTGGTCACCGGAAGAAGATGACAAGCTCATGAACTACATGCTAAGCAATGGACAAGGTTGTTGGAGTGATGTCGCCAGGAATGCTGGCTTGCAAAGATGTGGCAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAGCGCGGTGCTTTCTCTCCCCAGGAAGAAGAACTTATCATCCATCTTCATTCCCTTCTCGGCAACAGATGGTCCCAAATAGCGGCGCGCTTGCCCGGACGAACCGACAACGAAATCAAGAATTTCTGGAATTCCACAATAAAGAAAAGGCTCAAGCTCATGTCTTCCACCACCGCAACCTCACATAATGCAAGCGAGTCGTCTTCCTTGTTGTCTGAGCCTAATATTAAAGACCTCAACAATGTCATGGGAGGTTTCATGCCTATGTTCAACAACAACAACAACATAATTGAGAGGTTGCCCATGCTTGAGCGTGGACTAAACGCGCAGGCAGCTTCTGACGGATTCTTCAACACTAATGGAGGGCCTTGCTTCACACAAAATGGGGTTAGCCACAACATTAATAATGGTTTTTATGTAGAAAATGGAGTGTTTGGGATCGGGAGTGTAAATATTGGAGCAGAAGGGGAGCTGTTTGTGCCTCCTCTCGAGAGTGTTAACACTATAACTGATAATCTGCAGAAACTGGAGAATAGAGACACTAACGCTAATAGTTACTTTGACAACATAAACAGCATCGTCAATAACTGCAACATTAGCTGCAGCAACAATAATAGGGCTGAGAATAGAGGTGGCGTGGAGAATCTATTTCAGGAGGAGTTAACTTTGGGAGAGTGGGACTTAGAGGACTTGATGAAAGATGTCTCATCCTTTCCCTTACTTGATTTTTCAAGCTGA 951 0.4479 MRKPESGKNNTNNNNNKLRKGLWSPEEDDKLMNYMLSNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKLMSSTTATSHNASESSSLLSEPNIKDLNNVMGGFMPMFNNNNNIIERLPMLERGLNAQAASDGFFNTNGGPCFTQNGVSHNINNGFYVENGVFGIGSVNIGAEGELFVPPLESVNTITDNLQKLENRDTNANSYFDNINSIVNNCNISCSNNNRAENRGGVENLFQEELTLGEWDLEDLMKDVSSFPLLDFSS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5712g00002 316 FunFam MYB transcription factor 17 73 - -
Pral5712g00002 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Pral5712g00002 316 SMART sant 19 69 IPR001005 -
Pral5712g00002 316 SMART sant 72 120 IPR001005 -
Pral5712g00002 316 MobiDBLite consensus disorder prediction 1 22 - -
Pral5712g00002 316 PANTHER MYB DOMAIN PROTEIN 55 12 227 - -
Pral5712g00002 316 Gene3D - 74 143 - -
Pral5712g00002 316 Gene3D - 17 73 - -
Pral5712g00002 316 CDD SANT 75 115 IPR001005 -
Pral5712g00002 316 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Pral5712g00002 316 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Pral5712g00002 316 FunFam Transcription factor MYB46 74 146 - -
Pral5712g00002 316 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Pral5712g00002 316 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Pral5712g00002 316 CDD SANT 23 67 IPR001005 -
Pral5712g00002 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Pral5712g00002 316 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5712g00002 Pral-Chr5712 12219 14616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5712g00002 1 309 MYB Transcription Factor Family AT5G12870 48.896 2.60e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5712g00002 Myb_DNA-binding 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5712g00002 K09422 - gmx:100785810 390.963