Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5708g00030 ATGGGAAATAACAAAGAAGCATTTTCCTCAGATTCTTCTAGCTCCAATCCAACTCGAAGAACCTGGAAGTATGACGTTTTTTTAAGTTTTAGAGGTGAAGACACTCGTGAAGGCTTCACAAGCCACTTGTATCAAGCGTTGGGTGGGAGAGGATTCCATGTTTTTATAGACTATGGACTTACAAGAGGAGAAGTTATCTCACAAGAACTGCTGCAAGCAATTGAAGAATCTCGCTTTGCAGTTGTTGTTCTCTCTGAAAATTATGCTTCTTCTTTTTGGTGTTTAGATGAGCTCCAACATATTCTTACCTCAAGAAATAACTCAGATCAAATAGTTTTCCCTATCTTTTATCGTGTACATCCACCAGATGTGATAAACCAACGAGGAATATTTGGTGAAGCTTTTGCCAAACTTGCACGCGGTAAGCCCCAGTCGAAGGTGAAAAAATGGAGGGATTCTCTAACAGAAGTGGCCCATTTAGCTGGTTTTGATACCCGTAATTACCGGGACGAAGCAGCACTCATTATGGATGTGGTTGAAAATTTATGGGGCCAACTTCGTTCTGTACTGCCACCTGTCAAGGCACATAGTGATGCACTGGTTGGAATTGAGCCGAGGGTAGACGAAATGCTTTCAATCTCAGGGATAGGGTTGGATGACGTTCGGTTTATAGGAATAAGGGGCATGGGCGGTGTTGGCAAGACCACTCTTGCTAGAGTTATCTATGAGACGCTCCATCACCTGTTTGATTTTCCTTGTTTTCTTGCCAATGTTAGGGAGGTTTCAGCTGAAAGAAATGGCATACTTCACTTGCAGAAACTACTGCTTTCACATTTCAACGTAAAAGACTTACATATTGAAGACACGTATGAAGGACAGAACATGTTAGGATACCTTCTCCGCAACAGAAAGGTTTTGCTTGTCCTTGATGATGCAAGTGATCTAGGACAGTTACGGAGTTTAGCTAGAAGCCGAAAGTGGTTTGGTGATGGCAGTAGAATATTCATAACAACTAGAGATTTAGACTTACTGACATGTCATGAAGTTGATGAAATATATGAGATTACACCCATGACCGATGCAGAATCTCTTCAACTCTTTTATCAGAAAGCATTTGGAGGAAGAGGTGTCCCTGCTAATGAAGATCAATTTTGGCAGTTGGCTAGATCAGCAATTGGTTATGCACATGGCCTTCCTTTGGCTCTCTGTGTTTTAGGCTCCTTCCTTTGTGGTAGAGATGATTTAACAGAATGGGTAGATGCTTTGCAATTGTTGATAGAAGATTCAAATAATGACATTTTTAAGATACTTGGAATAAGCTACAATCAACTGAATCGTGCAGAAAAGACAATATTTTTAGATATTGCCTGTTTTTTTAACAGGTGGGGAAAAGATGAAATAATTCAAATATTGGCAGGTTGTGGACTTCCTGCTCCAGCTAGTTTAGGTAGCCTTCGAAAAAAATCTTTGCTTGCTGAAATTGAGATTGGCGGTACTACATATATAGAGATGCATGATTTGATTCAAGAGATGGGTAGACTGATTGTTATTGAGGAATCTCCTATTATTGTTGGAAGACGCAGTAGACTGTGGCTTCCCAATGACATTGACCAACTAATGGAAAGTGACATGGGAACTGAAGCAACGGAAGGCATGGTTCTGCCTCATAGCTTTGAGAAAGATGAAGTAGATTGGAATCCTGAAGCCTTTTTAAAATTGTGTTTGCTTGGAATGCTTATCATATCAAGTAATTTTAATCTTTCCCTTCCCTTCAGAGGTCTTCCTCGAATATTGAAAGTTCTTCATTGGTATGGATATCCTATGGAATCTCTTCCTTCTAATGTGAAGATGGATCAAATCAGATATCTCAAAATGCACAATAGCAAAATAAAGCGCCTTTCTAATGATAAACAGTCTATGAAGAAGCTAAAGATTTTGGACTTAAGCCATTCCAAATATCTCCTTCAAACTCCAAATTTTGTTGGATATCATAATTTAAAAAGACTGATTCTTGAAGGCTGCACATCACTTGTTGAAATTCATTCTTCACTCGGACAGCTTCACTGTCTTGTTGAAGTAAATTTGAAAGGTTGCATTAATCTTAAAGTCCTTCCCCAAAAATTGGAAATGGATTCTCTAGAAAAATTAGTTCTCTGTGGGTGTGTTCGAGTAAGAATTCTTCCGGAATTTGAAGAAAATATGGAAAAGCTTAGAACACTTGATGTCAAAGAGACAAGTGTAACCAGACTTCCTAAGTCCCTTGGATACTTAACAGGGATTGAAACTTTGGATTTAAGGGGTTGCCAAAAGCTTGTTGGCCTTCCCCATGACATTCACAAATTGAAGCGTCTGAAAGTTCTTGATATCTCATGCTGCTCAAATTTTTCTGCATTACCAGAAAAGCTCAATGAAAATGAAGCCTTGGAAAAGCTTGATGCAAGTGGAACAGCTATCGTAGAAGTACCTTCTTCTATTTGTCATTTAAAAAAATTAAAGGCACTAGCATTTCATGGATGCAAAAATCCAACTTCCAATTCAAGTGTGTGGTCTCTTCTTTGGAGCCAAATGTTTCAGAGTCATTCATCTCTTAAGTACTTAACATTGCCTGCTTCTATCTTCAATATTCAATCATTGACAGAATTAGATTTGAGCTACTGCAATATTGTTGATGGGATCATTCCTAATGAACTCAATGGCTTATCATCATTGCGGACATTAGATTTGAGTGGAAACGTGTTTATGAATCTACCTGATGGCTGCATTTCTAATCTTTTGAATCTACAGTCTTTTTATTTGAATTCTTGCCCAAAGCTTCAATTTTTGCCACAGCCTTCGCCGAGTTTAAATCTAATGGATGTCGGAGAATGTGGTTCATTGAGAACTTTGTCAGACAGACAATTGTTACATCTCTTTGCTTCAATTGAACAGCATGCTCAAGAATTAAGGAGAATTAAGTCTTTTTCAGTGACTATTCCAGGGAGTGAAATACCATCATGGTTTGAGAATCAGAATCATCTTCGTCTGAATGAGAAACGTGAAGCCTCTGTAACCATAGACATGCCTGAAGATGAATGGTTGGGAATTGGGTTGTGCACAGTAATTGATGATAAGATTTGTTTGCCTCGCTTGGGGTTTGATTTCAAAGCTTCCGATGGTAAGTATGTGTCCCTTCAAGGGAGGACACGTGAACATGAGAAAGAAATAAAATCTTCCCATCTATGGATAGCGTTTTGGAAAATTGAAGAGGAAAACAGAGGTGAACTATCAAGGAATTACAGTGAGATTCGCTTGAAATTTTGTACTGGTTGGGAACAGCCTCCATTAAGATTGGTTGATGTAGAGTCAATCAAGTGTGGATGGCGTTTCATTCGCGAAGGTGATTTAGAACGACTCTAG 3396 0.3884 MGNNKEAFSSDSSSSNPTRRTWKYDVFLSFRGEDTREGFTSHLYQALGGRGFHVFIDYGLTRGEVISQELLQAIEESRFAVVVLSENYASSFWCLDELQHILTSRNNSDQIVFPIFYRVHPPDVINQRGIFGEAFAKLARGKPQSKVKKWRDSLTEVAHLAGFDTRNYRDEAALIMDVVENLWGQLRSVLPPVKAHSDALVGIEPRVDEMLSISGIGLDDVRFIGIRGMGGVGKTTLARVIYETLHHLFDFPCFLANVREVSAERNGILHLQKLLLSHFNVKDLHIEDTYEGQNMLGYLLRNRKVLLVLDDASDLGQLRSLARSRKWFGDGSRIFITTRDLDLLTCHEVDEIYEITPMTDAESLQLFYQKAFGGRGVPANEDQFWQLARSAIGYAHGLPLALCVLGSFLCGRDDLTEWVDALQLLIEDSNNDIFKILGISYNQLNRAEKTIFLDIACFFNRWGKDEIIQILAGCGLPAPASLGSLRKKSLLAEIEIGGTTYIEMHDLIQEMGRLIVIEESPIIVGRRSRLWLPNDIDQLMESDMGTEATEGMVLPHSFEKDEVDWNPEAFLKLCLLGMLIISSNFNLSLPFRGLPRILKVLHWYGYPMESLPSNVKMDQIRYLKMHNSKIKRLSNDKQSMKKLKILDLSHSKYLLQTPNFVGYHNLKRLILEGCTSLVEIHSSLGQLHCLVEVNLKGCINLKVLPQKLEMDSLEKLVLCGCVRVRILPEFEENMEKLRTLDVKETSVTRLPKSLGYLTGIETLDLRGCQKLVGLPHDIHKLKRLKVLDISCCSNFSALPEKLNENEALEKLDASGTAIVEVPSSICHLKKLKALAFHGCKNPTSNSSVWSLLWSQMFQSHSSLKYLTLPASIFNIQSLTELDLSYCNIVDGIIPNELNGLSSLRTLDLSGNVFMNLPDGCISNLLNLQSFYLNSCPKLQFLPQPSPSLNLMDVGECGSLRTLSDRQLLHLFASIEQHAQELRRIKSFSVTIPGSEIPSWFENQNHLRLNEKREASVTIDMPEDEWLGIGLCTVIDDKICLPRLGFDFKASDGKYVSLQGRTREHEKEIKSSHLWIAFWKIEEENRGELSRNYSEIRLKFCTGWEQPPLRLVDVESIKCGWRFIREGDLERL 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5708g00030 1131 Gene3D - 20 188 IPR035897 -
Pral5708g00030 1131 Gene3D Ribonuclease Inhibitor 857 991 IPR032675 -
Pral5708g00030 1131 Gene3D Ribonuclease Inhibitor 730 851 IPR032675 -
Pral5708g00030 1131 Gene3D Ribonuclease Inhibitor 560 729 IPR032675 -
Pral5708g00030 1131 Pfam NB-ARC domain 220 442 IPR002182 GO:0043531
Pral5708g00030 1131 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 188 - -
Pral5708g00030 1131 PRINTS Disease resistance protein signature 638 654 - -
Pral5708g00030 1131 PRINTS Disease resistance protein signature 395 409 - -
Pral5708g00030 1131 PRINTS Disease resistance protein signature 223 238 - -
Pral5708g00030 1131 PRINTS Disease resistance protein signature 299 313 - -
Pral5708g00030 1131 ProSiteProfiles TIR domain profile. 22 186 IPR000157 GO:0007165
Pral5708g00030 1131 SUPERFAMILY "Winged helix" DNA-binding domain 432 540 IPR036390 -
Pral5708g00030 1131 SMART till_3 23 160 IPR000157 GO:0007165
Pral5708g00030 1131 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 163 IPR035897 -
Pral5708g00030 1131 SUPERFAMILY L domain-like 567 962 - -
Pral5708g00030 1131 Pfam Leucine Rich Repeat 902 924 IPR001611 GO:0005515
Pral5708g00030 1131 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 741 IPR044974 GO:0006952
Pral5708g00030 1131 Coils Coil 623 643 - -
Pral5708g00030 1131 Gene3D - 358 445 IPR042197 -
Pral5708g00030 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 455 IPR027417 -
Pral5708g00030 1131 Pfam TIR domain 23 191 IPR000157 GO:0007165
Pral5708g00030 1131 SMART LRR_typ_2 734 757 IPR003591 -
Pral5708g00030 1131 SMART LRR_typ_2 900 923 IPR003591 -
Pral5708g00030 1131 Gene3D - 189 352 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5708g00030 Pral-Chr5708 367492 373200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5708g00030 24 870 WRKY Transcription Factor Family AT4G12020 30.769 1.04e-91 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5708g00030 - - pcin:129316410 1019.99