Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5708g00022 ATGAATCCGTTAACCCTAGTGAAGCGCATTCAGAATATCAATTCCAAAGAAGCTTCTTTGGGCATCAGCGAGGAGGCTTCCTGGCACGCCAAATACAAAGATTCCGCTTATGTATTCGTGGGTGGGATTCCCTTCGATCTCACCGAGGGTGATCTCCTCGCAGTTTTTGCTCAATACGGGGAGGTTGTTGATGTAAATCTTGTTAGGGACAAAGGTACTGGGAAGTCAAAAGGTTTTGCATTTCTTGCATATGAAGATCAAAGAAGCACAAATCTTGCCGTAGATAATTTGAATGGAGCACAGATTCTGGGTAGAATAATTAGGGTTGATCATGTTACAAAATATAAAAAGAAAGAAGAGGAAGATGAAGAGACAGAGAGGAAGAAAAGGGAGGAACGAGGTGTCTGTCGAGCTTTCCAAAGAGGTGAATGTACACGTGGAGCTAGCTGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAACACAGGTTGGGGGGCCCCTGAGGATGCTGGTTCAAAGTGGGGTCATGAAAAATTTGACGGTCCCAAAAAAGAGAAAAAATATGGAAACAATCAATCAAGTCATATTCCAGAAGCCAGAGAACATGATCATAGAAGAGAGAAGAGATCTAGAAGGCATGAAGATGATGAACTTGTGTCTAGGGCAGGAGAAGATCGTAATAGAAGGGAAGATAGACAATCAAGAAGGAGAAATGATGATGATGATATGGAACTTGAGCGAAGAGATCATCATATGAGGGAAGACACCAAGTCAAGGAAGCCAGATGATGATGAGCTTGAACCCAGGACTAGAGATTCTGATAGAAGGGAAGAAAAGAGGTACAGGAGACAAGATGATGATGATGATTTTGGTACTAGGTCAAGGGAAGAGAGGAGGTCAAGGCAGCATAGAGAATATGATTCTGCATCAAGGTCGAGAGAAGATTATGATGTGAAGCAAGGGGACAGATCGAACAGACATGATACGAATAGATCAGACGTAAAAGTAAAATATGATTCCAACAAGAGAGATGAAAAGAGATCAAGAAGGTAA 1053 0.4198 MNPLTLVKRIQNINSKEASLGISEEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEETERKKREERGVCRAFQRGECTRGASCKFSHDEQRAANTGWGAPEDAGSKWGHEKFDGPKKEKKYGNNQSSHIPEAREHDHRREKRSRRHEDDELVSRAGEDRNRREDRQSRRRNDDDDMELERRDHHMREDTKSRKPDDDELEPRTRDSDRREEKRYRRQDDDDDFGTRSREERRSRQHREYDSASRSREDYDVKQGDRSNRHDTNRSDVKVKYDSNKRDEKRSRR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5708g00022 350 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Pral5708g00022 350 MobiDBLite consensus disorder prediction 154 350 - -
Pral5708g00022 350 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Pral5708g00022 350 Gene3D - 133 229 - -
Pral5708g00022 350 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Pral5708g00022 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Pral5708g00022 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Pral5708g00022 350 Gene3D - 26 132 IPR012677 -
Pral5708g00022 350 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pral5708g00022 350 FunFam Uncharacterized protein 127 205 - -
Pral5708g00022 350 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Pral5708g00022 350 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Pral5708g00022 350 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 236 - -
Pral5708g00022 350 MobiDBLite consensus disorder prediction 171 350 - -
Pral5708g00022 350 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Pral5708g00022 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5708g00022 Pral-Chr5708 309058 312311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5708g00022 35 109 Eukaryotic Initiation Factors Gene Family AT2G36660 29.333 7.45e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5708g00022 K13107 - gmx:100792988 402.519