Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5705g00027 ATGGAACTGAAGAAATCTGGAAACGAAGTTTGGTTCTGCAAGGGTTGGGACGAATTCGTGAAATACTACTCTATCAGTTTTGGCTTCTTTTTAATGTTTAAATATGAAGGCAATTCGCAGTTCGGTGTGGTTATCTTTGATATTAGTGCAGCTGAGATTCACTATCCCTACAAAATTAACTCTCAGACTGAGAAGCATAGAACAAAAAGAACATCCAGCTCTGATCAATGTGGCTACAACACAACGAGCCAAAGGCATGAGCTAGAAGAAGAAGAAATAATTGACCTAGACGATGAGACTGCATTAAACCTGGGTAAATCGGGAGACAAAGACAGATCTGAGCAAGGCCATTGTTCCAAAATGAAGAAGAGAAGTTTGAGTAAAAAGCAAAGAGCTATGGAAGCTGCCCAGAAGTTCAAACCAGCAAATCGATCTTTTACTGTAACAATAAGGGCATCTCATCTGAATCGTCGTTATCTGGATGTGCCAGCTTCATTTTGGAAGGATAATATGGGGAAGAAGAGTCCTACGAAGCTGCAGGACTCTAATGGACGAAAATGGGAGGTCAATTATGCTAAAAAGCAGACATCTATGCGAATATGGAAGGGTTGGATCAGTTTTGCAAGGGCCAACAATGTGAAGGAAGGAGACGTCTGCGTGTTTGAGCTTATCAAGAGGAAAGACTACATATTTCGAGTTACCATATTTTCCTGTTGA 717 0.4073 MELKKSGNEVWFCKGWDEFVKYYSISFGFFLMFKYEGNSQFGVVIFDISAAEIHYPYKINSQTEKHRTKRTSSSDQCGYNTTSQRHELEEEEIIDLDDETALNLGKSGDKDRSEQGHCSKMKKRSLSKKQRAMEAAQKFKPANRSFTVTIRASHLNRRYLDVPASFWKDNMGKKSPTKLQDSNGRKWEVNYAKKQTSMRIWKGWISFARANNVKEGDVCVFELIKRKDYIFRVTIFSC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5705g00027 238 SUPERFAMILY DNA-binding pseudobarrel domain 139 237 IPR015300 -
Pral5705g00027 238 CDD B3_DNA 144 237 IPR003340 GO:0003677
Pral5705g00027 238 Gene3D - 125 238 IPR015300 -
Pral5705g00027 238 Gene3D - 1 50 IPR015300 -
Pral5705g00027 238 SMART B3_2 146 234 IPR003340 GO:0003677
Pral5705g00027 238 ProSiteProfiles B3 DNA-binding domain profile. 1 49 IPR003340 GO:0003677
Pral5705g00027 238 PANTHER B3 DOMAIN-CONTAINING 1 231 - -
Pral5705g00027 238 Pfam B3 DNA binding domain 146 236 IPR003340 GO:0003677
Pral5705g00027 238 MobiDBLite consensus disorder prediction 102 121 - -
Pral5705g00027 238 MobiDBLite consensus disorder prediction 62 90 - -
Pral5705g00027 238 ProSiteProfiles B3 DNA-binding domain profile. 145 238 IPR003340 GO:0003677
Pral5705g00027 238 SUPERFAMILY DNA-binding pseudobarrel domain 2 56 IPR015300 -
Pral5705g00027 238 MobiDBLite consensus disorder prediction 102 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5705g00027 Pral-Chr5705 153598 154396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5705g00027 3 236 B3 DNA Binding Superfamily AT3G18990 29.123 1.94e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral5705g00027 B3 2.9e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5705g00027 - - pcin:129315065 297.745