Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5705g00023 ATGGGGCCTCTTATGATCATTCCTTCTCGTTTTCTCTGCTTCATTTTCCTTGTGCTCAGTGCCTCAAGCCTCCACGTCCACGCCTTAGCTTGGCTTCATGCTCATGCAACCTTCTATGGAGCCGATCAAAGTCCCACCGCCTTGGGAGGAGCATGTGGCTACGATAACACGTTTCATGCTGGGTTTGGAGTGAACACAGCAGCAGTGAGTACGATGTTGTTCAGAGGTGGACAGGTGTGTGGTGCATGCTACCGAGTAATGTGCGACTACCGGGCCGACCCTAAATGGTGCCTCCGGGGCCGGACCGTCACCGTCACGGCCACCAACTTTTGCCCTCCGAACAACCACGGAGGGTGGTGCGACCCGCCTCACCACCACTTCGACATGTCCATGCCTGCTTTCTTTCGCATTGCTCGACAAGGCAACGAAGGCATCGTCCCTGTCCTTTATGCAAGGGTGGGGTGCAGGAGAAGAGGGGGAGTGAGGTTTACGTTGAAGGGGCAAGGGAACTTCAACATGGTGATGATATCGAACGTAGGAGGGAGTGGGGAAGTGAAGAATGTGTGGGTCAGAGGGTCCAGGTCAGCAACGTGGTCCCAAATGCATAGGAACTGGGGGGCCTACTGGCAAGCCAACATGGACCTTCGAAACCAAAACCTCTCCTTCAAGCTCACCTTGTCTGATTCCAAATCTGTTCTCTTCTCCAATGTTGTTCCTTCCTCTTGGTCCTTCGGCCAGACCTTTGCTTCTCGCTCTCAGTTCTTCTAA 768 0.5391 MGPLMIIPSRFLCFIFLVLSASSLHVHALAWLHAHATFYGADQSPTALGGACGYDNTFHAGFGVNTAAVSTMLFRGGQVCGACYRVMCDYRADPKWCLRGRTVTVTATNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIVPVLYARVGCRRRGGVRFTLKGQGNFNMVMISNVGGSGEVKNVWVRGSRSATWSQMHRNWGAYWQANMDLRNQNLSFKLTLSDSKSVLFSNVVPSSWSFGQTFASRSQFF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5705g00023 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
Pral5705g00023 255 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Pral5705g00023 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Pral5705g00023 255 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Pral5705g00023 255 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Pral5705g00023 255 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Pral5705g00023 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Pral5705g00023 255 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Pral5705g00023 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Pral5705g00023 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Pral5705g00023 255 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Pral5705g00023 255 CDD DPBB_EXPA_N 31 155 - -
Pral5705g00023 255 Pfam Lytic transglycolase 66 150 IPR009009 -
Pral5705g00023 255 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Pral5705g00023 255 Gene3D - 18 156 IPR036908 -
Pral5705g00023 255 PANTHER EXPANSIN-A15 17 253 IPR002963 GO:0009664
Pral5705g00023 255 SUPERFAMILY Barwin-like endoglucanases 13 178 IPR036908 -
Pral5705g00023 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Pral5705g00023 255 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Pral5705g00023 255 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Pral5705g00023 255 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Pral5705g00023 255 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Pral5705g00023 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Pral5705g00023 255 Gene3D - 160 255 IPR036749 -
Pral5705g00023 255 SMART dpbb_1 66 150 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5705g00023 Pral-Chr5705 135570 136653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5705g00023 5 255 Expansin Gene Family AT3G15370 58.719 8.17e-117 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5705g00023 - - gmx:100803855 414.461