LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5703g00004	ATGAACGAGAAGGCTAACGTGTCTAAGGAGCTCAACGCCAAGCATAAAAAGATACTGGAAGGACTTCTTAAATTACCAGAAAATAGGGAGTGTGCTGACTGCAAAGCTAAAGGACCGAGATGGGCTAGTGTGAACCTAGGCATCTTTATATGCATGCAATGCTCAGGAATACATCGAAGTCTAGGAGTACATATATCAAAGGTGCGGTCTGCAACTTTGGACACTTGGCTACCAGAGCAGGTTGCCTTCATTCAATCAATGGGAAATGAGAAAGCAAATAGTTACTGGGAAGCAGAGTTACCCCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGCGCAAAATATGAAGAGAAGAGGTGGGTGGCGAAGGATGGGAAACCAAAATCACCTTCTAGCCTGCAGGGAGATAAATCTTCTTCACATTGGCAGAGGCCTGCAGAAAGAAGTGGGCACGGTTCTCATGCATCTGCTTCTGAGAATACTTTTGAGGAAAGGAAGAAAATTCAGCCATCAAATACAACTCCTGCTGCTAAATTTACTGTTTCCGCTCCCCCAAAAGGACCTCAGCTGGCAATACCTGTCATAAAACCTCAGCATGTTGAGAAAGTGGAAGCGGTGGCACCACAACCTCAAGCTGAGACAACAAAGCCATCTACTGATACGCCTCAGAGTACCCCTGCAAAAGTTGACTTTGCTACAGATCTGTTCGACATGTTGTCTATGGATGGCCCAAGTGAAAATGATTCAGGCGCTGCTGCTGCTGCTACGGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCTACAGAGGCATCAGCAACAGAGAAGACTAGTCCCACAAAAGCAGTTGAGAGTACTCCGTCAGCTTCTGGAATTGAGGATCTATTTAAGGATTCATCCTCACCTTCGGTGGCACCAAGCTTAGTTCCAGAAAAACCACAGAAAGATTTAAAAAATGATATAATGAGCCTCTTTGAGAAGTCCAATATGGTGTCTCCATTTGCAATGCACCAACAACAACTTGCCATGCTGGCACAGCAACAGTCCCTTCTGATGGCCGCTGCAGCTAAATCTGCCAGTGGGGACCCCAAGAATCCCGGTAGTTTACAACAATCTGGACTGAATGGGTCCGATATTGCCGCACAAAGTTGGCCAGGTGTTGGCTACCCTATCCCTGGAGCTGTGCCAATGCCTGGTCAGTCTGAGCTATTGAAACTCATGCAGACTGGGAACATTACTCCAGCACAACCTGCAGGAAGTGCTGTTCAATATCCGTCTGGTTTCTATATGATGGGACAAGGCGCTCCAGTTAATGGGACGACCACAAGTGGAGGGAGTAAACCTCAGCCAGCAGCCCCGGCATCATCAGCCCCTTCACAGTCATCAGGAAAGGACTATGATTTTTCCTCTCTAACACAAGGAATGTTTTCGAAACACTGA	1449	0.4645	MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVAKDGKPKSPSSLQGDKSSSHWQRPAERSGHGSHASASENTFEERKKIQPSNTTPAAKFTVSAPPKGPQLAIPVIKPQHVEKVEAVAPQPQAETTKPSTDTPQSTPAKVDFATDLFDMLSMDGPSENDSGAAAAATADDNNWAGFQSAATEASATEKTSPTKAVESTPSASGIEDLFKDSSSPSVAPSLVPEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLAMLAQQQSLLMAAAAKSASGDPKNPGSLQQSGLNGSDIAAQSWPGVGYPIPGAVPMPGQSELLKLMQTGNITPAQPAGSAVQYPSGFYMMGQGAPVNGTTTSGGSKPQPAAPASSAPSQSSGKDYDFSSLTQGMFSKH	482

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5703g00004	482	CDD	ArfGap	19	117	-	-
	Pral5703g00004	482	Gene3D	Arf GTPase activating protein	1	130	IPR038508	-
	Pral5703g00004	482	MobiDBLite	consensus disorder prediction	271	310	-	-
	Pral5703g00004	482	FunFam	stromal membrane-associated protein 1 isoform X1	1	128	-	-
	Pral5703g00004	482	MobiDBLite	consensus disorder prediction	207	229	-	-
	Pral5703g00004	482	MobiDBLite	consensus disorder prediction	271	318	-	-
	Pral5703g00004	482	MobiDBLite	consensus disorder prediction	213	229	-	-
	Pral5703g00004	482	MobiDBLite	consensus disorder prediction	124	192	-	-
	Pral5703g00004	482	Pfam	Putative GTPase activating protein for Arf	17	125	IPR001164	GO:0005096
	Pral5703g00004	482	MobiDBLite	consensus disorder prediction	438	482	-	-
	Pral5703g00004	482	SMART	arf_gap_3	16	130	IPR001164	GO:0005096
	Pral5703g00004	482	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	124	IPR037278	-
	Pral5703g00004	482	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5	1	482	IPR044520	GO:0005096
	Pral5703g00004	482	MobiDBLite	consensus disorder prediction	360	380	-	-
	Pral5703g00004	482	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	16	130	IPR001164	GO:0005096
	Pral5703g00004	482	MobiDBLite	consensus disorder prediction	366	380	-	-
	Pral5703g00004	482	PRINTS	HIV Rev interacting protein signature	28	47	IPR001164	GO:0005096
	Pral5703g00004	482	PRINTS	HIV Rev interacting protein signature	47	64	IPR001164	GO:0005096
	Pral5703g00004	482	PRINTS	HIV Rev interacting protein signature	68	89	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5703g00004	Pral-Chr5703	32643	38013	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5703g00004	16	123	C2H2 Transcription Factor Family	AT4G05330	49.138	3.98e-30	118

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5703g00004	K12486		-	gmx:100807561	651.744