Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5700g00033 ATGGCACATCTGGGGTGTAATCTCGGGGGCCCGACCAGTTCTCAGCCGGATACAGGTTTGGCAGATGACGATCTGTATACAGAGTTATGGAAGCTGTGCGCTGGGCCTCTGGTGGATGTTCCTCGTTCTGGGGAGAGAGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAATTGAACCAACAAATTCCCCATTTCAACATTTCATCTAAGATTCTATGCCGTGTCATGCACATTCAGTTATTGGCGGAACCAGACACTGATGAAGTTTATGCTCGGATTACTTTGCTTCCAGAATCAGATCAAACTGAGCCTACCAGTTCTGATCCTTGTCCACCAGAGACTCGGACTCAGGCCTTTCATTCATTTTGCAAAATACTAACAGCATCTGATACTAGCACGCATGGAGGATTCTCAGTTCTGCGGAAGCATGCTAATGAGTGCTTGCCTCAATTGGACATGACTCAAGCAACTCCTACTCAGGAGTTAGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAATTTAAGCATATATTCAGAGGTCAACCAAGGAGACACTTGCTAACAACTGGCTGGAGTACATTTGTCACTTCCAAAAGATTGGTAGCTGGAGACGCATTCGTGTTTTTGAGGGGAGAGAATGGAGAACTGAGAGTTGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCAATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTGCCACTCGTACCATGTTTGTAGTTTACTACAAACCAAGGACTAGACAGTATATAATTGGTTTAAACAAATATCTCGCGGCAATCAACAATAAGTTCTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGGAGATGATTCGCCTGAGAGAAGGTTTTCAGGAACAATTGTTGGTGTTGGGGATTTATCTCCAGAGTGGCAAGACTCAAAGTGGAGGTCGTTGAAGGTACAATGGGATGAACCTGCAACAATCCCAAGGCCAGAGAGGGTTTCTCCTTGGGAGATAGAACCTTTTGTGGCTTCTGCACCTGTAAATCTCGTTCAACCAGCCATAAAGAGCAAGAGGTCTCGGCCTGCCGATGTTCCATCTTCTGAAATGATTTCCAATTCGGCTGCTTCAGCATTCTGGTATCACGGGTCATCCCAGTCCCATGAACTTGCTCCACTAAGCGGCACAGCAGAAGCCCAGAGCAATGAAAACCAGGTTCTATGGAACGCAAGGCAGAACATAAATGGCAATGCTATGAACAACAGTAGCTCCTGCAACTCTAGAGTCCGGATCGAAGGAACGTGGCCTTCATCACATTTGAACATCTCTCCAAACTGTTTTGCTGACCCCAAAAACAACAAAGCTGTTGCAGTTCAATCTTCTATCTCTGGTTGTCCCCCCGTCTCTTCTTGGCCAAATGATGCTCCAGCATATGATCAAGTTGAGAACGGAAAGAAATCTACTGAGAATCCTGTGGGGTGCCGGCTATTTGGTGTTAATTTGACTAACAACTCTAATAATGTTGCTCCTCCAGAGAAAGACTCAAGAGTCTGCATTGCCAGTCCTAGTGGTTCCAAAGAATCTAATCCTGTTGTTGCATGTGAAAATAAGACAAGTCAGAACCCCAATTGTTCCGTGTCCAAAAAGGAGCAGAAGAACGAAACGTCTAATGCAACCCCAAATGAGAGGCAGGGCAAGCAGGCATCTTTACCATCCACAAGGACTCGCACAAAGGTACAAATGCAAGGAGTGGCTGTTGGTCGTGCTGTTGACTTGACTATGTTGAATGGCTACGACAGCCTGATCGAAGAGCTCGAGAAGTTGTTCGATATTAAGGGAGAGCTTCGTGCACAGAACAAATGGGCGGTTACTTTCACGGACGATGAGAATGACATGATGCTCGTGGGCGATGATCCATGGCCGGAGTTCTGTAAAATGGTGAAGAGGATTATCATATATCCAAGCGAGGAAGTGAAGAAGACGAATACACTCTGCCCGGTTCCTCCATCTTCATCAGAAGATGATGAAACTCTCATCACGGCGAATTCACAGAATAAGGATGAAAGTCAGTAG 2121 0.4625 MAHLGCNLGGPTSSQPDTGLADDDLYTELWKLCAGPLVDVPRSGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVMHIQLLAEPDTDEVYARITLLPESDQTEPTSSDPCPPETRTQAFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLAAINNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDLSPEWQDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASAPVNLVQPAIKSKRSRPADVPSSEMISNSAASAFWYHGSSQSHELAPLSGTAEAQSNENQVLWNARQNINGNAMNNSSSCNSRVRIEGTWPSSHLNISPNCFADPKNNKAVAVQSSISGCPPVSSWPNDAPAYDQVENGKKSTENPVGCRLFGVNLTNNSNNVAPPEKDSRVCIASPSGSKESNPVVACENKTSQNPNCSVSKKEQKNETSNATPNERQGKQASLPSTRTRTKVQMQGVAVGRAVDLTMLNGYDSLIEELEKLFDIKGELRAQNKWAVTFTDDENDMMLVGDDPWPEFCKMVKRIIIYPSEEVKKTNTLCPVPPSSSEDDETLITANSQNKDESQ 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5700g00033 706 Gene3D - 127 231 IPR015300 -
Pral5700g00033 706 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Pral5700g00033 706 MobiDBLite consensus disorder prediction 1 20 - -
Pral5700g00033 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral5700g00033 706 MobiDBLite consensus disorder prediction 537 593 - -
Pral5700g00033 706 SMART B3_2 130 232 IPR003340 GO:0003677
Pral5700g00033 706 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral5700g00033 706 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Pral5700g00033 706 Gene3D - 291 363 - -
Pral5700g00033 706 ProSiteProfiles PB1 domain profile. 590 673 IPR000270 GO:0005515
Pral5700g00033 706 MobiDBLite consensus disorder prediction 678 706 - -
Pral5700g00033 706 Pfam AUX/IAA family 635 672 IPR033389 -
Pral5700g00033 706 Pfam AUX/IAA family 559 626 IPR033389 -
Pral5700g00033 706 Coils Coil 614 634 - -
Pral5700g00033 706 CDD B3_DNA 128 230 IPR003340 GO:0003677
Pral5700g00033 706 FunFam Auxin response factor 128 232 - -
Pral5700g00033 706 FunFam Auxin response factor 585 678 - -
Pral5700g00033 706 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Pral5700g00033 706 MobiDBLite consensus disorder prediction 519 593 - -
Pral5700g00033 706 MobiDBLite consensus disorder prediction 680 706 - -
Pral5700g00033 706 Gene3D - 586 678 - -
Pral5700g00033 706 SUPERFAMILY CAD & PB1 domains 585 666 - -
Pral5700g00033 706 FunFam Auxin response factor 291 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5700g00033 Pral-Chr5700 138825 144151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5700g00033 25 676 B3 DNA Binding Superfamily AT4G23980 56.364 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral5700g00033 AUX_IAA 3.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5700g00033 K14486 - gmx:100795763 986.867