Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5700g00032 ATGGCACATCTGGGGTGTAATCTCGGGGGCCCGACCAGTTCTCAGCCGGATACAGGTTTGGCAGATGACGATCTGTATACAGAGTTATGGAAGCTGTGCGCTGGGCCTCTGGTGGATGTTCCTCGTTCTGGGGAGAGAGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAATTGAACCAACAAATTCCCCATTTCAACATTTCATCTAAGATTCTATGCCGTGTCATGCACATTCAGTTATTGGCGGAACCAGACACTGATGAAGTTTATGCTCGGATTACTTTGCTTCCAGAATCAGATCAAACTGAGCCTACCAGTTCTGATCCTTGTCCACCAGAGACTCGGACTCAGGCCTTTCATTCATTTTGCAAAATACTAACAGCATCTGATACTAGCACGCATGGAGGATTCTCAGTTCTGCGGAAGCATGCTAATGAGTGCTTGCCTCAATTGGACATGACTCAAGCAACTCCTACTCAGGAGTTAGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAATTTAAGCATATATTCAGAGGTCAACCAAGGAGACACTTGCTAACAACTGGCTGGAGTACATTTGTCACTTCCAAAAGATTGGTAGCTGGAGACGCATTCGTGTTTTTGAGGGGAGAGAATGGAGAACTGAGAGTTGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCAATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTGCCACTCGTACCATGTTTGTAGTTTACTACAAACCAAGGACTAGACAGTATATAATTGGTTTAAACAAATATCTCGCGGCAATCAACAATAAGTTCTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGGAGATGATTCGCCTGAGAGAAGGTTTTCAGGAACAATTGTTGGTGTTGGGGATTTATCTCCAGAGTGGCAAGACTCAAAGTGGAGGTCGTTGAAGGTACAATGGGATGAACCTGCAACAATCCCAAGGCCAGAGAGGGTTTCTCCTTGGGAGATAGAACCTTTTGTGGCTTCTGCACCTGTAAATCTCGTTCAACCAGCCATAAAGAGCAAGAGGTCTCGGCCTGCCGATGTTCCATCTTCTGAAATGATTTCCAATTCGGCTGCTTCAGCATTCTGGTATCACGGGTCATCCCAGTCCCATGAACTTGCTCCACTAAGCGGCACAGCAGAAGCCCAGAGCATAAATGGCAATGCTATGAACAACAGTAGCTCCTGCAACTCTAGAGTCCGGATCGAAGGAACGTGGCCTTCATCACATTTGAACATCTCTCCAAACTGTTTTGCTGACCCCAAAAACAACAAAGCTGTTGCAGTTCAATCTTCTATCTCTGGTTGTCCCCCCGTCTCTTCTTGGCCAAATGATGCTCCAGCATATGATCAAGTTGAGAACGGAAAGAAATCTACTGAGAATCCTGTGGGGTGCCGGCTATTTGGTGTTAATTTGACTAACAACTCTAATAATGTTGCTCCTCCAGAGAAAGACTCAAGAGTCTGCATTGCCAGTCCTAGTGGTTCCAAAGAATCTAATCCTGTTGTTGCATGTGAAAATAAGACAAGTCAGAACCCCAATTGTTCCGTGTCCAAAAAGGAGCAGAAGAACGAAACGTCTAATGCAACCCCAAATGAGAGGCAGGGCAAGCAGGCATCTTTACCATCCACAAGGACTCGCACAAAGGTACAAATGCAAGGAGTGGCTGTTGGTCGTGCTGTTGACTTGACTATGTTGAATGGCTACGACAGCCTGATCGAAGAGCTCGAGAAGTTGTTCGATATTAAGGGAGAGCTTCGTGCACAGAACAAATGGGCGGTTACTTTCACGGACGATGAGAATGACATGATGCTCGTGGGCGATGATCCATGGCCGGAGTTCTGTAAAATGGTGAAGAGGATTATCATATATCCAAGCGAGGAAGTGAAGAAGACGAATACACTCTGCCCGGTTCCTCCATCTTCATCAGAAGATGATGAAACTCTCATCACGGCGAATTCACAGAATAAGGATGAAAGTCAGTAG 2085 0.4628 MAHLGCNLGGPTSSQPDTGLADDDLYTELWKLCAGPLVDVPRSGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVMHIQLLAEPDTDEVYARITLLPESDQTEPTSSDPCPPETRTQAFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLAAINNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDLSPEWQDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASAPVNLVQPAIKSKRSRPADVPSSEMISNSAASAFWYHGSSQSHELAPLSGTAEAQSINGNAMNNSSSCNSRVRIEGTWPSSHLNISPNCFADPKNNKAVAVQSSISGCPPVSSWPNDAPAYDQVENGKKSTENPVGCRLFGVNLTNNSNNVAPPEKDSRVCIASPSGSKESNPVVACENKTSQNPNCSVSKKEQKNETSNATPNERQGKQASLPSTRTRTKVQMQGVAVGRAVDLTMLNGYDSLIEELEKLFDIKGELRAQNKWAVTFTDDENDMMLVGDDPWPEFCKMVKRIIIYPSEEVKKTNTLCPVPPSSSEDDETLITANSQNKDESQ 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5700g00032 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 666 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral5700g00032 694 MobiDBLite consensus disorder prediction 507 582 - -
Pral5700g00032 694 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Pral5700g00032 694 MobiDBLite consensus disorder prediction 1 20 - -
Pral5700g00032 694 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral5700g00032 694 SMART B3_2 130 232 IPR003340 GO:0003677
Pral5700g00032 694 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Pral5700g00032 694 Gene3D - 574 666 - -
Pral5700g00032 694 FunFam Auxin response factor 128 232 - -
Pral5700g00032 694 FunFam Auxin response factor 573 666 - -
Pral5700g00032 694 Pfam AUX/IAA family 550 614 IPR033389 -
Pral5700g00032 694 Pfam AUX/IAA family 623 660 IPR033389 -
Pral5700g00032 694 MobiDBLite consensus disorder prediction 525 582 - -
Pral5700g00032 694 MobiDBLite consensus disorder prediction 474 494 - -
Pral5700g00032 694 ProSiteProfiles PB1 domain profile. 578 661 IPR000270 GO:0005515
Pral5700g00032 694 Coils Coil 602 622 - -
Pral5700g00032 694 CDD B3_DNA 128 230 IPR003340 GO:0003677
Pral5700g00032 694 SUPERFAMILY CAD & PB1 domains 573 654 - -
Pral5700g00032 694 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Pral5700g00032 694 Gene3D - 291 363 - -
Pral5700g00032 694 Gene3D - 127 231 IPR015300 -
Pral5700g00032 694 MobiDBLite consensus disorder prediction 668 694 - -
Pral5700g00032 694 MobiDBLite consensus disorder prediction 665 694 - -
Pral5700g00032 694 FunFam Auxin response factor 291 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5700g00032 Pral-Chr5700 138825 144152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5700g00032 19 664 B3 DNA Binding Superfamily AT2G46530 56.944 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral5700g00032 AUX_IAA 7.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5700g00032 K14486 - gmx:100795763 975.311