Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5700g00025 ATGGGAAGAGCTCCATGTTGTGCAAAAGTAGGGTTACACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTCACTAAGTATATTCAAGCTCATGGCGAGGGTCAATGGAAATCTCTTCCTAAAAAAGCTGGGCTTTTGAGATGCGGGAAAAGTTGCAGGCTGAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGAAACATAAGTCCGGAGGAAGATGACCTCATCATCAGAATGCATTCTCTGATCGGAAACCGGTGGTCTCTCATCGCCGGCCGGTTACCAGGACGAACAGATAACGAAATCAAGAACTACTGGAACACTCATCTCAGCAAAAGAGTCAAAGCGCAGCAGTTAGGACCTGATCATCAACCCAGAGACAACGCCGACAAGACGAAAAAGAAGAAAAAGAAGAAGCCCGCGAAAAATAACAGTAAGGACAAATCCAACAGTGACAATAATGAGGAGGAGGAAGAGAAGAAGACAAAGATATATCTTCCGAAACCAATTAGGGTTAGGGCTCTGCGTATAAGCAGGAACGACGAAGATTCCAAGAACGGTTCTTGTACTTCAGGAAGTGGATCTTCAAGCCAAGAACTAGTGCAGAAGCAAGATATGATGGATGTGATGAGTTATGAGCCATGGGGTGAAAATGACGTGTTTGGTTTCTTTGCGGAGGAAGGTCAAAATATTGAGAGAGTCAACGGCTCAATATCAGAAGAAAATATTAATAATAATGAAATGGAATGCGAGTCACTGGAGAGGCTGTACGAGGAGTATTTGCAGCTCTTAAAGGATGATATTAGTGACGAAAAGCAAGGGGAATTGGATTCTTTTGCTCAATCTTTGTTTGTCTGA 864 0.4317 MGRAPCCAKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNISPEEDDLIIRMHSLIGNRWSLIAGRLPGRTDNEIKNYWNTHLSKRVKAQQLGPDHQPRDNADKTKKKKKKKPAKNNSKDKSNSDNNEEEEEKKTKIYLPKPIRVRALRISRNDEDSKNGSCTSGSGSSSQELVQKQDMMDVMSYEPWGENDVFGFFAEEGQNIERVNGSISEENINNNEMECESLERLYEEYLQLLKDDISDEKQGELDSFAQSLFV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5700g00025 287 MobiDBLite consensus disorder prediction 186 202 - -
Pral5700g00025 287 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5700g00025 287 CDD SANT 16 61 IPR001005 -
Pral5700g00025 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral5700g00025 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral5700g00025 287 Gene3D - 14 66 - -
Pral5700g00025 287 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5700g00025 287 SMART sant 13 63 IPR001005 -
Pral5700g00025 287 SMART sant 66 114 IPR001005 -
Pral5700g00025 287 FunFam Myb transcription factor 11 67 - -
Pral5700g00025 287 Gene3D - 71 116 - -
Pral5700g00025 287 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 228 - -
Pral5700g00025 287 MobiDBLite consensus disorder prediction 179 202 - -
Pral5700g00025 287 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral5700g00025 287 CDD SANT 71 112 IPR001005 -
Pral5700g00025 287 MobiDBLite consensus disorder prediction 146 164 - -
Pral5700g00025 287 MobiDBLite consensus disorder prediction 117 164 - -
Pral5700g00025 287 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral5700g00025 287 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5700g00025 287 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5700g00025 Pral-Chr5700 106868 108550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5700g00025 1 118 MYB Transcription Factor Family AT5G49330 72.034 6.42e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5700g00025 Myb_DNA-binding 9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5700g00025 K09422 - gmx:100101857 296.975