Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5700g00012 ATGACAATCCCAGATCTGAATTTTGGATTTAAATCTTTTATTGCAATCATGATTTTGTTCCTCATTGAACGCCTCTACCGCTTCATGTGCATCAGCCCTCCCGTATATGCAGGTTTTGCATTTGTTTATTATGAGGATGAGCGTGATGCTGAAGATGCAATTCGTGCATTAGACAATTTTCCTTTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGTGAACGTGGTCGTCATCGAGATGGGTCCAGAGCAAACCAGAGGCCCACCAAAACATTATTTGTGATTAACTTTGACCCAATCCGCACTAGAGTTCGTGATATAGAAAGGCACTTCGAACCATATGGGAAAGTTCTTCATGTTAGGATTCGCAGGAATTTTGCTTTTGTGCAGTTTGAATCACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGACGATGAGAGGGGTGACAGATATTATGACAGCCCCAGAAGAGGGGGATATGGAAGATCACCCAGTCCAGTTGTTCGTAGGCGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGTACAATGGACCAGCATACGATAGACGTAGGAGTCCCGATTATGGGAGGCCAAGGAGTCCCGATTATGGGAGGCCAAGGAGTCCTGAATATGGCAGATACCGCAGCCGCTCACCAATCCGAAGGTCCCGCACCTGA 759 0.4638 MTIPDLNFGFKSFIAIMILFLIERLYRFMCISPPVYAGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFESQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRRGGYGRSPSPVVRRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRPRSPEYGRYRSRSPIRRSRT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5700g00012 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 164 IPR000504 GO:0003723
Pral5700g00012 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 157 IPR000504 GO:0003723
Pral5700g00012 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 62 IPR000504 GO:0003723
Pral5700g00012 252 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 33 108 - -
Pral5700g00012 252 MobiDBLite consensus disorder prediction 211 244 - -
Pral5700g00012 252 FunFam Serine/arginine-rich splicing factor RS31 85 175 - -
Pral5700g00012 252 SUPERFAMILY RNA-binding domain, RBD 37 167 IPR035979 GO:0003676
Pral5700g00012 252 CDD RRM2_AtRSp31_like 94 163 - -
Pral5700g00012 252 SMART rrm1_1 15 72 IPR000504 GO:0003723
Pral5700g00012 252 SMART rrm1_1 94 160 IPR000504 GO:0003723
Pral5700g00012 252 MobiDBLite consensus disorder prediction 169 252 - -
Pral5700g00012 252 Gene3D - 88 173 IPR012677 -
Pral5700g00012 252 Gene3D - 34 87 IPR012677 -
Pral5700g00012 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5700g00012 Pral-Chr5700 51834 53725 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5700g00012 38 169 Eukaryotic Initiation Factors Gene Family AT1G49760 24.658 5.20e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5700g00012 K12893 - mnt:21406229 357.066