Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5700g00009 | ATGGAGTTGCAAAGCTCAGGAAAGGAAACAAATTCACGATTTTTCAGGCTACTTGGTGGAATAGTTGCGAAGATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCTGAGCTGGAGCGCCTGTTTGCTAAGTATGGGAGGATAGAACGCGTAGACATGAAATCGGGTTTTGCATTTGTTTATTATGAGGATGAGCGTGATGCTGAAGATGCAATTCGTGCATTAGACAATTTTCCTTTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGTGAACGTGGTCGTCATCGAGATGGGTCCAGAGCAAACCAGAGGCCCACCAAAACATTATTTGTGATTAACTTTGACCCAATCCGCACTAGAGTTCGTGATATAGAAAGGCACTTCGAACCATATGGGAAAGTTCTTCATGTTAGGATTCGCAGGAATTTTGCTTTTGTGCAGTTTGAATCACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGACGATGAGAGGGGTGACAGATATTATGACAGCCCCAGAAGAGGGGGATATGGAAGATCACCCAGTCCAGTTGTTCGTAGGCGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGTACAATGGACCAGCATACGATAGACGTAGGAGTCCCGATTATGGGAGGCCAAGGAGTCCCGATTATGGGAGGCCAAGGAGTCCTGAATATGGCAGATACCGCAGCCGCTCACCAATCCGAAGGTCCCGCACCTGA | 825 | 0.4727 | MELQSSGKETNSRFFRLLGGIVAKMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFESQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRRGGYGRSPSPVVRRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRPRSPEYGRYRSRSPIRRSRT | 274 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5700g00009 | 274 | SMART | rrm1_1 | 27 | 94 | IPR000504 | GO:0003723 | |
Pral5700g00009 | 274 | SMART | rrm1_1 | 116 | 182 | IPR000504 | GO:0003723 | |
Pral5700g00009 | 274 | CDD | RRM2_AtRSp31_like | 116 | 185 | - | - | |
Pral5700g00009 | 274 | SUPERFAMILY | RNA-binding domain, RBD | 26 | 189 | IPR035979 | GO:0003676 | |
Pral5700g00009 | 274 | Gene3D | - | 108 | 197 | IPR012677 | - | |
Pral5700g00009 | 274 | Gene3D | - | 23 | 107 | IPR012677 | - | |
Pral5700g00009 | 274 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 26 | 98 | IPR000504 | GO:0003723 | |
Pral5700g00009 | 274 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 115 | 186 | IPR000504 | GO:0003723 | |
Pral5700g00009 | 274 | MobiDBLite | consensus disorder prediction | 233 | 266 | - | - | |
Pral5700g00009 | 274 | MobiDBLite | consensus disorder prediction | 191 | 274 | - | - | |
Pral5700g00009 | 274 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 117 | 179 | IPR000504 | GO:0003723 | |
Pral5700g00009 | 274 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 84 | IPR000504 | GO:0003723 | |
Pral5700g00009 | 274 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 115 | 266 | - | - | |
Pral5700g00009 | 274 | FunFam | Serine/arginine-rich splicing factor RS31 | 25 | 108 | - | - | |
Pral5700g00009 | 274 | FunFam | Serine/arginine-rich splicing factor RS31 | 109 | 197 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5700g00009 | Pral-Chr5700 | 38140 | 53725 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5700g00009 | 24 | 253 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.820 | 2.01e-09 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5700g00009 | K12893 | - | mnt:21406229 | 418.698 |