Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5700g00009 ATGGAGTTGCAAAGCTCAGGAAAGGAAACAAATTCACGATTTTTCAGGCTACTTGGTGGAATAGTTGCGAAGATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCTGAGCTGGAGCGCCTGTTTGCTAAGTATGGGAGGATAGAACGCGTAGACATGAAATCGGGTTTTGCATTTGTTTATTATGAGGATGAGCGTGATGCTGAAGATGCAATTCGTGCATTAGACAATTTTCCTTTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGTGAACGTGGTCGTCATCGAGATGGGTCCAGAGCAAACCAGAGGCCCACCAAAACATTATTTGTGATTAACTTTGACCCAATCCGCACTAGAGTTCGTGATATAGAAAGGCACTTCGAACCATATGGGAAAGTTCTTCATGTTAGGATTCGCAGGAATTTTGCTTTTGTGCAGTTTGAATCACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGACGATGAGAGGGGTGACAGATATTATGACAGCCCCAGAAGAGGGGGATATGGAAGATCACCCAGTCCAGTTGTTCGTAGGCGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGTACAATGGACCAGCATACGATAGACGTAGGAGTCCCGATTATGGGAGGCCAAGGAGTCCCGATTATGGGAGGCCAAGGAGTCCTGAATATGGCAGATACCGCAGCCGCTCACCAATCCGAAGGTCCCGCACCTGA 825 0.4727 MELQSSGKETNSRFFRLLGGIVAKMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFESQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRRGGYGRSPSPVVRRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRPRSPEYGRYRSRSPIRRSRT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5700g00009 274 SMART rrm1_1 27 94 IPR000504 GO:0003723
Pral5700g00009 274 SMART rrm1_1 116 182 IPR000504 GO:0003723
Pral5700g00009 274 CDD RRM2_AtRSp31_like 116 185 - -
Pral5700g00009 274 SUPERFAMILY RNA-binding domain, RBD 26 189 IPR035979 GO:0003676
Pral5700g00009 274 Gene3D - 108 197 IPR012677 -
Pral5700g00009 274 Gene3D - 23 107 IPR012677 -
Pral5700g00009 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Pral5700g00009 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 186 IPR000504 GO:0003723
Pral5700g00009 274 MobiDBLite consensus disorder prediction 233 266 - -
Pral5700g00009 274 MobiDBLite consensus disorder prediction 191 274 - -
Pral5700g00009 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 179 IPR000504 GO:0003723
Pral5700g00009 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 84 IPR000504 GO:0003723
Pral5700g00009 274 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 115 266 - -
Pral5700g00009 274 FunFam Serine/arginine-rich splicing factor RS31 25 108 - -
Pral5700g00009 274 FunFam Serine/arginine-rich splicing factor RS31 109 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5700g00009 Pral-Chr5700 38140 53725 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5700g00009 24 253 Eukaryotic Initiation Factors Gene Family AT4G34110 26.820 2.01e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5700g00009 K12893 - mnt:21406229 418.698