Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5700g00005 ATGATGGTACTGGATGCAGTCTCTTCTGCCACGTCTGGTCCTACTACTGAAGTTATTTCTCAGCTTTTAGATTCCATTTTTGAACTTGTAGCCGCTGCTAGGGATGTCCTTGTGAAGAAGGAGGGTTTTAATGAACTTGCAGCTTACTTGGAAAGAATTGTACCCATCCTAAAAGAACTGAGGAATAAAAAAGTCAGTGATATTGAGACATTTAACCGCACCATTGACATTTTGAATCGTGAAATTAAAGAGGCAACTAAACTGACACAAGAATGCAGCAAGAGGAACAAGGTCTATCTCTTATTGAACTGCAGGTCTATCACAAAGCGTTTAAAGAATGGTGCAACTGAAATCAGCCGTGCTCTTGGACTTATTCCTCTTGCTACTCAAGATCTTTCTTCTGGAATAATTGAAGAAATTAAAATACTCTGTGACAATATGCAGAAAGCTGAGTTTAAGGCAGCCATAGCAGAAGAGCAGATTTTGGACAAAATCGAGTCAGGGATACATGAAAAGAATGTTGACCGCTCTTATGCCAATAATTTGTTGATTCTCATTGCACAAGCTGTCGGCATAACAAATGAGAAGTCAACAATGAAGAAGGAACTGGAAGAATTCAAGAGTGAGGTTGAAAATGCCCGTCTAAGGAAGGACCTAGCCGAAGCAATACAAATGGATCAGATCATCGCTTTGCTTGAAAGGGCTGATGCAGCCTCATCACCAAGGGAAAAGGAACTGAAATACTTTGCAAAACGCAAATCTCTTGGAAATCAACCCTTAGATCCTCTTCAATCATTTTATTGCCCCATAACTCGAGATGTTATGGTGGATCCCGTTGAAACTTCTTCAGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAATATGTGTCCTCTGACGATGACTCCTTTAGACACATCAGTTTTGCGACCTAATAAAACCTTGAAACAATCAATAGAAGAATGGAAGGATCGAAATACTATGATCAGGATTGCCTCAATGAAAGAAAAAATCCAGGCAGGAGAGGATGAAGAAGTGTTGCATTGTCTGGAAACTCTGAAGGGATTGTGTGAAGAAAAAGATCAGCACAGAGAATGGATGATAATGGAGAATTACATACCAGTTCTTATCCAGGTTCTTGGCTCCAGAAACCGTGACGTAAGGAATGAAGCTCTTCTCATCCTTTTCATGTTGGCTAAGGATAACGATGATGCCAAGGAAAGACTTGCAAATGTTGATAATGCAATTGAATCAATTGTCCGTACTCTTGGACGTCGTGTGACGGAAAGGAAATTGGCAGCAGCTTTATTGTTGGAGTTATCTAAGTATGATAGATTACGAGAATACATTGGAAAGGTTCAAGGTTGCATACTACTATTAGTGACTATATCTAGCAGTGATGATAACCAAGCTGCCAGGGATGCTGCAGAACTACTGGAGAATCTTTCATACTCTGATCAGAATGTTTTGCAGATGGCAAAGGCAAACTATTTCAAGCATCTGTTGCAGCGCCTTTCCTCAGGACCAGATGATGTAAAATTGCTGATGGCCACTACTTTAGCAGAAATGGAGTTAACCGACCACAATAAAGAGTCTTTATTCGCAGATGGTGTTCTGGATCCTCTTCTTCACTTGGTCTCATACGGTGATCCTCAGGTGAAAACCATGGCCATTAGAGCTCTTCGGAACCTATCCAGTTTAAAGAAAAACGGACTGGAAATGATTCAAAAAGGAGCAGCGCGCCCATTATTTAGGCTTCTTTTCCAGCGAAGCTTACCACCCTCAGTTTTGTGGGAACATGTAGCTGCCATAATCATGCAACTTGCTGAATCAACCATTGCGCAGGATACCCAGACACCAGTTTTATTATTTGAATCTGATGACGATGTTTATAACCTCTTTGCCTTAATTAGATTCTCAGGGCCTGAGGTGAAGCGAAGCATTATCCAGACCTTTTATGCCTTGTGTCAAACCACATCAGCTTCATACATAAAGACCAAGCTAATAGAGTGCTCTGCTGTTCAAGAACTGGTTCGATTTTGTGAGAACGAAAACCTTGATCTACGAGCAAGTGCTGTAAAACTGCTGTCATGCTTGGTTGCAAGTTGTGATGAGGCAAGCATTCTGGAGAATGTAAACCAGAAGAGTTGTGAGAATTTAGTACGGATCCTTAGATCTTCTTCGGATGAAAAAGAACTTGCTTCTGCTATGGGCATAATATGCCATCTTCCTGATATTCCCCATATCTCTCAGTGGTTTCTGGATGATGGTGTACTGCCCATCATTTATAAGTATATCCAAGAAGGGAAAGACAAAGATCTCCAAAAGAATAACTTGGTAGAAAATGCAGTGGGCGCCCTATGTCGTTTCACAGTCCCAGCAAACTTGGAGTGGCAAAAAAGTGCAGCAGAAACTGGTATTATAACTATTTTAGTACAGTTGCTTGAATGTGGAACCACATTGGCAAAACAACGTTCAGCATTGTGTCTTAGTCAATTTTCAAAGAGTTCAGTTGGGCTGAGCAAGCCAATTTCTAAGCACAAGGGTCTCTGGTGCTTCTCCCCTCCTGCAGGAATGAGCTGCCCGGTTCATGGAGGAATCTGTTCTGTCAAGTCATCATTTTGCCTTGTAGAGGCTGATGCAGTGGCACCTCTAACAAGGACTCTCTGGGATTCTGATCCCGGAGCATGTGAGGCTTCTTTGGATGCACTCCTGACTTTGATTGAAGGTGAGAGACTGCAGAATGGTAGTAAAGTGCTTGATACAGCAAACGCCATACCAGCAATGATAAGATTTCTCAGTTCCCCATCCCCTGGACTGCAGGAAAAATCTCTTGATGCTTTGGAGAGGATTTTTAGGTTAATCGAGTACAAACAAAAGTATGGACCCTCAGCTCAAATGCCCCTAGTTGACTTGACTCAGCGTGGTAATAGTAGCATGAGATCGAAGGCGGCTAGGATATTGGCACATCTAAATGTGCTTCATGATCAGTCTTCTTACTTCTGA 3024 0.4183 MMVLDAVSSATSGPTTEVISQLLDSIFELVAAARDVLVKKEGFNELAAYLERIVPILKELRNKKVSDIETFNRTIDILNREIKEATKLTQECSKRNKVYLLLNCRSITKRLKNGATEISRALGLIPLATQDLSSGIIEEIKILCDNMQKAEFKAAIAEEQILDKIESGIHEKNVDRSYANNLLILIAQAVGITNEKSTMKKELEEFKSEVENARLRKDLAEAIQMDQIIALLERADAASSPREKELKYFAKRKSLGNQPLDPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFAEGNNMCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMIRIASMKEKIQAGEDEEVLHCLETLKGLCEEKDQHREWMIMENYIPVLIQVLGSRNRDVRNEALLILFMLAKDNDDAKERLANVDNAIESIVRTLGRRVTERKLAAALLLELSKYDRLREYIGKVQGCILLLVTISSSDDNQAARDAAELLENLSYSDQNVLQMAKANYFKHLLQRLSSGPDDVKLLMATTLAEMELTDHNKESLFADGVLDPLLHLVSYGDPQVKTMAIRALRNLSSLKKNGLEMIQKGAARPLFRLLFQRSLPPSVLWEHVAAIIMQLAESTIAQDTQTPVLLFESDDDVYNLFALIRFSGPEVKRSIIQTFYALCQTTSASYIKTKLIECSAVQELVRFCENENLDLRASAVKLLSCLVASCDEASILENVNQKSCENLVRILRSSSDEKELASAMGIICHLPDIPHISQWFLDDGVLPIIYKYIQEGKDKDLQKNNLVENAVGALCRFTVPANLEWQKSAAETGIITILVQLLECGTTLAKQRSALCLSQFSKSSVGLSKPISKHKGLWCFSPPAGMSCPVHGGICSVKSSFCLVEADAVAPLTRTLWDSDPGACEASLDALLTLIEGERLQNGSKVLDTANAIPAMIRFLSSPSPGLQEKSLDALERIFRLIEYKQKYGPSAQMPLVDLTQRGNSSMRSKAARILAHLNVLHDQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5700g00005 1007 Pfam Armadillo/beta-catenin-like repeat 533 572 IPR000225 GO:0005515
Pral5700g00005 1007 Gene3D - 15 130 IPR036537 GO:0007166
Pral5700g00005 1007 Coils Coil 68 95 - -
Pral5700g00005 1007 Coils Coil 189 223 - -
Pral5700g00005 1007 SUPERFAMILY RING/U-box 256 335 - -
Pral5700g00005 1007 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Pral5700g00005 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1007 - -
Pral5700g00005 1007 Gene3D - 341 433 IPR011989 -
Pral5700g00005 1007 Gene3D - 434 629 IPR011989 -
Pral5700g00005 1007 CDD RING-Ubox_PUB 266 315 IPR045210 -
Pral5700g00005 1007 SUPERFAMILY ARM repeat 323 997 IPR016024 -
Pral5700g00005 1007 Gene3D - 633 856 IPR011989 -
Pral5700g00005 1007 Gene3D - 872 1005 IPR011989 -
Pral5700g00005 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Pral5700g00005 1007 SMART arm_5 449 490 IPR000225 GO:0005515
Pral5700g00005 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Pral5700g00005 1007 SMART arm_5 408 448 IPR000225 GO:0005515
Pral5700g00005 1007 SMART arm_5 532 572 IPR000225 GO:0005515
Pral5700g00005 1007 SMART arm_5 667 707 IPR000225 GO:0005515
Pral5700g00005 1007 SMART arm_5 366 406 IPR000225 GO:0005515
Pral5700g00005 1007 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Pral5700g00005 1007 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Pral5700g00005 1007 CDD MLKL_NTD 19 130 - -
Pral5700g00005 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 340 IPR013083 -
Pral5700g00005 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Pral5700g00005 1007 Coils Coil 408 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5700g00005 Pral-Chr5700 26465 34145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5700g00005 264 1007 U-box Gene Family AT1G76390 28.180 8.46e-65 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5700g00005 - - gmx:100799969 1410.2