Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5699g00010 ATGTCTGCCCATTATGAATTCTCTCATTCTGCAGCAGCGGAAACATACAACAGAACGACATCCACTTCTTCATCTTCTTCACCAACAAGAACATCCGGAACCGGGAAAAAGAATAGCAGTAGCAAAAAAAGGTTCAGTGAGGAGCAAATCAAGTTAATGGAGTCCATTTTCGAGACTGAGTCCAAGCTCGATCACCCAAAACAGTTGCAGCTAGCTTCACACCTTGGCTTGCAGCCTCGCCAGGTGGCCATATGGTTCCAGAATAGAAGAGCTCGATCCAAGTCCAAACACCTCCAACGTTCTTACTATCTACTCCAAGCCAATTACGATGCTTTGGCTTCCAAAGTCGAGGCCCTCAAGAAGGAGAACCATGCATTACTTCTACAGTTGCAGGAGTTGAAAGATTCGAAAGATCAAACCTTTTGTTGTAAGAAAGTGGAAGATGAAAGTATGATGGACAGAAAGTCTGATAATGGAGGGACCTTCGTCAAGCCAAGTCCATCAATGGAAAGATCAGAACAAATACCTGGGATTCTTTCAGATGATGATAGGAGCTCAAAGGCAGAATATGTTGGGGCTGAAGATGAACTTGCGATTCTGAGCTTCTCTGATAAGCATACAGATAGTCCCTTGACGTCACAAGAAGTTTGGAGAAATCTTGAGTCCACTGATGATGACTTCTTAGCCCAGTCTGACGGTGGTTATCAATGGTGGGACTTCTGGTCCTGA 729 0.4444 MSAHYEFSHSAAAETYNRTTSTSSSSSPTRTSGTGKKNSSSKKRFSEEQIKLMESIFETESKLDHPKQLQLASHLGLQPRQVAIWFQNRRARSKSKHLQRSYYLLQANYDALASKVEALKKENHALLLQLQELKDSKDQTFCCKKVEDESMMDRKSDNGGTFVKPSPSMERSEQIPGILSDDDRSSKAEYVGAEDELAILSFSDKHTDSPLTSQEVWRNLESTDDDFLAQSDGGYQWWDFWS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5699g00010 242 SUPERFAMILY Homeodomain-like 21 96 IPR009057 -
Pral5699g00010 242 Pfam Homeodomain 41 94 IPR001356 GO:0003677
Pral5699g00010 242 Pfam Homeobox associated leucine zipper 96 136 IPR003106 GO:0006355|GO:0043565
Pral5699g00010 242 ProSitePatterns 'Homeobox' domain signature. 71 94 IPR017970 GO:0000981|GO:0006355
Pral5699g00010 242 CDD homeodomain 42 97 IPR001356 GO:0003677
Pral5699g00010 242 Gene3D - 20 98 - -
Pral5699g00010 242 SMART HOX_1 38 100 IPR001356 GO:0003677
Pral5699g00010 242 MobiDBLite consensus disorder prediction 1 46 - -
Pral5699g00010 242 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Pral5699g00010 242 MobiDBLite consensus disorder prediction 12 39 - -
Pral5699g00010 242 PRINTS Lambda-repressor HTH signature 76 92 IPR000047 GO:0003677
Pral5699g00010 242 PRINTS Lambda-repressor HTH signature 67 76 IPR000047 GO:0003677
Pral5699g00010 242 MobiDBLite consensus disorder prediction 152 183 - -
Pral5699g00010 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 180 IPR045224 GO:0003700
Pral5699g00010 242 Coils Coil 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5699g00010 Pral-Chr5699 119468 120592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5699g00010 25 242 Homeobox Transcription Factor Family AT2G46680 39.516 1.86e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5699g00010 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5699g00010 K09338 - gmx:100797862 218.009