Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5699g00004 ATGGATGATTTGATCATCCCTCCTTCTTCCTCGTCTTCTCTTCTCTCTCTCCCCCGAGATGCCCAACCCTCCCTTCAGCAAAAGCTCCAATTCCTTCTCAACAGTCAGCCTCATTGGTGGGTCTACGCCATTTTCTGGCAGATTTCCAACGACGACGTCAATGGCAATCTCCTCCTCTCCTGGGCTGAAGGCCATTTCAATGGCACCAAGGACACCTCCCCTCGTCTCTCCAGTTCCGGCGCCACTCCTTCCGCCGCTCCCCATTACACAGGCCTTCATTCTGACAGAACACGCCTCATGAACAACATTCACTCTCTCGTCGGCGATAATTCCCCCAATATCGCTAACATTTGCAGCGACCTCCACGATACCGAGTGGTTCTACGTCATGTCCTTGACTCGCACCTTCTCTGTCGCCTCCTCTGCTTCTCTCCCCGGCAAGGCCTTCACTTCCGGTTCTCTGCTCTGGCTCAACAGTGACCACGACCTTCAATTCTGCAACTGTGAGAGAGCCAAGGAGGCTTACTTGCACGGAATTGAGACACTGGTCTGTATACCCACCGATCACGGAGTCATCGAAATGGGCTCCTCCGATCTCATCCCGGAAAACTGGGCTCTCGCACAGCAGGCCAAAGCTCTGTTCGCGTCTGATCTCATCACCAAGCAACCCAACAACAACAGCCTGATTCAGTTCTTCGATGATCAGAACATTTCCTTCGCCGATATCGGCATTATAGCCGGCATACAAGAAGAAGAGGACAATTCCAACGTGCCCGACCGCAATAACAGCGCAAGGAATAATAACAGCAGGAAGAAGACGGAACAGAGGAACAAGGCCAATTCGGGATTCAAGTTCGGGTTTGCGGATTCGGAGCATTCCGATTCGGACTGTAATCCTTCCATAGAAAAAAGAACCCCAAAGAAGAGAGGGAGAAAACCCGGTCTGGGCCGCGAAACGCCGCTGAATCACGTGGAGGCAGAGCGGCAGCGACGGGAGAAGCTGAACCACCGGTTCTATGCGCTACGCGCGGTGGTTCCGAACGTGTCCAGAATGGACAAGGCTTCTCTGCTATCGGACGCGGTGGACTACATCAACGAGCTGAAATCGAAGATCGAGGACCTGGAGTCGCAGGTTCAGAAAGAAACGACCAACAACAATAACAGCAAAAGAGTGAAAACGGAAATGGCGGACACAAGCACTACTGCAGACAACCAGAGTGCGACGACTTCAACGGTGGAGCAAACGACGACGACGACGTCGGGAGGTGGGAACGCGACAGGGATGGAGGTGGAGGTGAGGATGATGGGACCGGAGGCAATGGTGAGGGTCCAATCGGAGAAGACGAACCACCCGGGGGCGAGGCTAATGGGAGCGCTGAGAGACCTGGAGCTGGGGGTTCACCATGCGAGCATGTCGTGCGTGAATGAGCTCATGCTGCAAGACGTGGTGGTGAAGATTCCTGAAGACTTGAGAAACGAAGACGCTCTCAAATCTGCCATTCTGGGGCGTCTGGCTCCCTAG 1521 0.5404 MDDLIIPPSSSSSLLSLPRDAQPSLQQKLQFLLNSQPHWWVYAIFWQISNDDVNGNLLLSWAEGHFNGTKDTSPRLSSSGATPSAAPHYTGLHSDRTRLMNNIHSLVGDNSPNIANICSDLHDTEWFYVMSLTRTFSVASSASLPGKAFTSGSLLWLNSDHDLQFCNCERAKEAYLHGIETLVCIPTDHGVIEMGSSDLIPENWALAQQAKALFASDLITKQPNNNSLIQFFDDQNISFADIGIIAGIQEEEDNSNVPDRNNSARNNNSRKKTEQRNKANSGFKFGFADSEHSDSDCNPSIEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKSKIEDLESQVQKETTNNNNSKRVKTEMADTSTTADNQSATTSTVEQTTTTTSGGGNATGMEVEVRMMGPEAMVRVQSEKTNHPGARLMGALRDLELGVHHASMSCVNELMLQDVVVKIPEDLRNEDALKSAILGRLAP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5699g00004 506 CDD bHLH_AtAIB_like 316 380 - -
Pral5699g00004 506 MobiDBLite consensus disorder prediction 312 329 - -
Pral5699g00004 506 SMART finulus 324 373 IPR011598 GO:0046983
Pral5699g00004 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 380 IPR036638 GO:0046983
Pral5699g00004 506 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 214 IPR025610 -
Pral5699g00004 506 MobiDBLite consensus disorder prediction 377 426 - -
Pral5699g00004 506 Coils Coil 357 391 - -
Pral5699g00004 506 Gene3D - 316 385 IPR036638 GO:0046983
Pral5699g00004 506 MobiDBLite consensus disorder prediction 378 425 - -
Pral5699g00004 506 MobiDBLite consensus disorder prediction 289 304 - -
Pral5699g00004 506 PANTHER MYC 21 503 IPR045084 GO:0003700|GO:0006355
Pral5699g00004 506 Pfam Helix-loop-helix DNA-binding domain 322 367 IPR011598 GO:0046983
Pral5699g00004 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 367 IPR011598 GO:0046983
Pral5699g00004 506 MobiDBLite consensus disorder prediction 251 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5699g00004 Pral-Chr5699 40118 42015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5699g00004 25 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.927 5.12e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5699g00004 bHLH-MYC_N 2.2e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5699g00004 - K13422 pcin:129291555 849.736