LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5682g00005	ATGTCTGCCAAAGCGGCTATTGAAGTTTCCAAAAGGATTCATTTGAAATCCCCTTGTAAGCCGGATTCCGTTCTTAATCTTTTCCGTGGCTACGGATTCTCTGATTCACAGATATCCAAAATTGTGAAACTTAGTCCTGTTGTGCTTTCAGCTAATCCCGAGAAGACCATTTTGCCTAAGCTAAAGTATTTCCAGTCTTTAGGGTTTTCATGTTCGGAGCTCCCAGGACTTCTCATGTCTCACTCTGTAATCCTGGACTGGAGCTTAAAGAATCGTTTAATTCCCTTTTGTGAGGCCCTTAAGAGTGTTCTTAATGACGACGAGAAAGTGAGAATAGCTTTAAGACGGTCAAGATGGTTTCTAATCTACTGGGAGGTAAACAATTTAGCTCCAAACATGAAGGTTTTGACAGATCTTGGAGTTCCTCGATCTTCTATTTGTGCGCTGTTAACTGCATTGCCAAATGTAGCATTTATGAATCCTGCCAAATTTGTTGAATGCGTCAAGTTTGCTAATGAAGCAGGAATCGACCCTTCTAAGGTCGTGTTCATTCAAGCTATCATTGTTTTAGCACAGGTAAAGAAATCAAGCTGGGAGTCAAAACTGGATTTGTTCGAGAGGTTTGGCTGGTCCAGGAATGTCACTCTATCAGCATTCAGTAAGTTTCCACATTGCATGCTTCTGTCAGAAGAAAATCTCACAAGCAAAATGAAGTTTCTTGTGGATGAAATGGGTTGTTCATTGGAAGATATAGCCGGATGCCCAACAATTCTTAGCTATAGCTTGAAGCGGATTATTCCGAGATGGTCAGTTATTAAAATTTTGAAAATCAACGGCTTGGCTGCAGATGATAAATGGTCTTTACCTTACATTATCATTGTAAGTGAGAAGAATTTTCGGGAGAAATTTGTGATCAGATTTCAGGAAATTGTTCCCCAGCTGCCGAAAATCTATAAAGATGAACTCAGAGCTTTATCTCAGGTCCAAAAGGAAAAAAAGCAACAACTCTGA	1011	0.3996	MSAKAAIEVSKRIHLKSPCKPDSVLNLFRGYGFSDSQISKIVKLSPVVLSANPEKTILPKLKYFQSLGFSCSELPGLLMSHSVILDWSLKNRLIPFCEALKSVLNDDEKVRIALRRSRWFLIYWEVNNLAPNMKVLTDLGVPRSSICALLTALPNVAFMNPAKFVECVKFANEAGIDPSKVVFIQAIIVLAQVKKSSWESKLDLFERFGWSRNVTLSAFSKFPHCMLLSEENLTSKMKFLVDEMGCSLEDIAGCPTILSYSLKRIIPRWSVIKILKINGLAADDKWSLPYIIIVSEKNFREKFVIRFQEIVPQLPKIYKDELRALSQVQKEKKQQL	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5682g00005	336	FunFam	Mitochondrial transcription termination factor-like	89	311	-	-
	Pral5682g00005	336	SMART	mt_12	39	70	IPR003690	GO:0003690\|GO:0006355
	Pral5682g00005	336	SMART	mt_12	216	247	IPR003690	GO:0003690\|GO:0006355
	Pral5682g00005	336	SMART	mt_12	111	142	IPR003690	GO:0003690\|GO:0006355
	Pral5682g00005	336	SMART	mt_12	248	278	IPR003690	GO:0003690\|GO:0006355
	Pral5682g00005	336	SMART	mt_12	147	177	IPR003690	GO:0003690\|GO:0006355
	Pral5682g00005	336	PANTHER	CGI-12 PROTEIN-RELATED	2	305	IPR003690	GO:0003690\|GO:0006355
	Pral5682g00005	336	Pfam	mTERF	194	299	IPR003690	GO:0003690\|GO:0006355
	Pral5682g00005	336	Pfam	mTERF	25	182	IPR003690	GO:0003690\|GO:0006355
	Pral5682g00005	336	Gene3D	Transcription termination factor 3, mitochondrial	80	310	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5682g00005	Pral-Chr5682	23563	24754	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Pral5682g00005		mTERF	1.1e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5682g00005	K15031		-	cave:132171571	283.493