Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5680g00004 ATGGATCCACAACTCTGCGCTAATGGCTGTGGCTTCTTCGGCTCTCCCGAGAATCACAACTTGTGCTCCAAGTGTTACAAAGATCATATCGTCAAGCTCAATAAAACGATCAGTGAATCAATGACAAGTCTCGCCGTATCGTCTTCTTCATCTGATGAACACAAGAATGAAGAGTCCTCGTCGATCGGCTTCATGAATTTTGGGGTTTCTGCTTCGGAATCATCTGATGAGTTTCAAGAGAAAAAGAGGTGCAAGAGTTGCAACAGAAAGGTCGGAGTAACAGGTGGATTTCGGTGCCGATGCGGAGACTTGTTTTGTGGGAAACATAGATATCCAGAAGAACATTCATGCACGGTGGATTATAAGCAGATTGGTCGTCAACTCATTCAAAAACAAAACCCACTTTGTGAAGCTGATAGACTATTCAGAGTTTAG 435 0.4345 MDPQLCANGCGFFGSPENHNLCSKCYKDHIVKLNKTISESMTSLAVSSSSSDEHKNEESSSIGFMNFGVSASESSDEFQEKKRCKSCNRKVGVTGGFRCRCGDLFCGKHRYPEEHSCTVDYKQIGRQLIQKQNPLCEADRLFRV 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5680g00004 144 ProSiteProfiles Zinc finger AN1-type profile. 78 125 IPR000058 GO:0008270
Pral5680g00004 144 FunFam Zinc finger AN1-type containing 6 45 140 - -
Pral5680g00004 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 50 - -
Pral5680g00004 144 Gene3D - 68 128 IPR035896 -
Pral5680g00004 144 Gene3D - 1 61 - -
Pral5680g00004 144 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Pral5680g00004 144 SMART AN1_Zf_4 84 122 IPR000058 GO:0008270
Pral5680g00004 144 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Pral5680g00004 144 SUPERFAMILY AN1-like Zinc finger 72 139 IPR035896 -
Pral5680g00004 144 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 141 - -
Pral5680g00004 144 Pfam AN1-like Zinc finger 84 122 IPR000058 GO:0008270
Pral5680g00004 144 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5680g00004 Pral-Chr5680 17103 17537 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5680g00004 4 144 C2H2 Transcription Factor Family AT3G52800 36.709 3.78e-25 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5680g00004 - - pcin:129303887 197.593