Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5678g00003 ATGGTGGCACCCCTTTACTTGGCTGCCTTCTTCTCTTCACTTTTCCATCTTCTTCTTCTTGTTCAGAGCTCCAAAATCCCAGACTTGGAAGCTCTCATGGCGTTTAAAACTTCTTCAGATACGTCCAACAAGCTCTCAACTTGGAACCCCAGTACTGACCCTTGTACTTCTTGGTCCGGCGTATATTGCCTCCATGACAGAGTCTCGCGGCTCGTTCTTGAAGACCTCGATCTCCGAGGCTCTTTCGAACATTTGACTTATCTAACTCAGCTTCGAGTTTTGAGCCTGAAGCGAAACCGCCTCTCCGGTCCCATTCCTAGCCTTTCCAATTTCACGGCCCTGAAACTTTTGTATCTCTCTTACAATGAGTTTTCCGGTGGCTTTCCGGCGACTGTCTCGTCGCTTTTCCGCTTGTACCGTCTTGATCTGTCACACAATAACTTGTCCGGCGAGATTCCCGCGACGGTCAACCATTTGACCCACATTCTCACTCTCCGTCTAAATGAGAACCGTTTCTCCGGCGACATTCCTAGTCTTAACCTTCCTAACCTTCAAGACTTCAATGTCTCCGGGAATCGACTGTCCGGCCAAATACCCAAATCACTGTCGGGTTTCCCCGAATCGAGTTTCGCTCTAAATCCGTCTCTTTGCGGAGCTCCGATGCAGAAATGTGCCAACTTTGTGGCCGAACCCAGCAAACCCGGATCTGAAGGAGCCATTGCGTCGCCATTAACGCCGCGAAGCAACCCAAGAACACCAACTATATCGTCCACACCGAGCTCAATGCCTGCAAACGAAGCAACACGTCCCAGAAAATCCAATTCATCAGCAAAAATAAGCCCCATTGCTCTCATCGCCATTATTCTCGGCGACATTGTGGTCCTCGCAGTGGTCTCCCTTCTGCTGTACTGCTACTTCTGGCAAAACTACGCCGCGAAATTGAAGGACGGAAAAGGTTCGAAGCTAATGGAGAGCGAGAAAATCGTGTATTCATCGAGTCCGTATCCGGTTCAATCGGGGTTTGAGAGGGGCCGAATGGTGTTCTTCGAAGGGGTGAAGAAATTCGAGCTAGAGGATTTGCTTCGAGCTTCAGCGGAAATGCTGGGAAAAGGGGGGTTCGGGACGGCGTACAAGGCGGTTCTGGATGACGGAAGTGTCGTCGCCGTCAAGAGGCTCAAAGAAGCTCAGATTGGAGGGAAGAAAGAGTTCGAGCAACAAATGGAAATTCTGGGAAGATTGAGGCATCCAAACATCGTTAATTTGAGAGCTTACTATTTTGCCAGAGACGAGAAGTTGCTGGTATCTGATTACATGCCCAATGGAAGCTTGTTCTGGCTTCTTCATGGTAACCGAGGGCCTGGCCGTACCCCACTGGACTGGACCACAAGGCTTAAAATAGCAGCCGGGGCGGCGCGTGGAGTGGCTTTTATTCACAGTTCATGCAAGTCGCTTAAGCTCACCCACGGTAACGTCAAATCCACAAATATCCTCCTCGACATGGCGGGAAATGCACGCGTGGCAGATTTCGGGCTCTCCATCTTTGCGGGCCCCACCGCCACTCCGAAATCTAACGGCTACCGTGCCCCGGAGGCTCTCGACGGACGGAGATGCACTCAAAAATCCGACGTGTACTCCTTTGGCGTCGTCCTACTGGAGATTCTCACCGGGAAGTGCCCATCCTCCGTGGACGGCAGCGGGTACGGCGGCAGTGCGATGGTAGATCTTCCGAGGTGGGTACAGTCGGTGGTAAGGGAGGAATGGACGGCGGAGGTATTCGATCTTGAGCTGATGAGGTACAAGGATATTGAGGATGAGATGGTGGGGCTGCTTCAGATTGCTCTGTCCTGTACGGCCGCTGCGCCTGATCAACGGCCCAGCATGAGCCACGTGGTGAAGATGATCGAGGAGATTCGTGGGGTCGAGGTGGGGCCGAGTCATGACACGTTGGACTCTGGGTCCGATTCACCTTCCGTGTCTGAAGATGCTTCCTGA 1992 0.5226 MVAPLYLAAFFSSLFHLLLLVQSSKIPDLEALMAFKTSSDTSNKLSTWNPSTDPCTSWSGVYCLHDRVSRLVLEDLDLRGSFEHLTYLTQLRVLSLKRNRLSGPIPSLSNFTALKLLYLSYNEFSGGFPATVSSLFRLYRLDLSHNNLSGEIPATVNHLTHILTLRLNENRFSGDIPSLNLPNLQDFNVSGNRLSGQIPKSLSGFPESSFALNPSLCGAPMQKCANFVAEPSKPGSEGAIASPLTPRSNPRTPTISSTPSSMPANEATRPRKSNSSAKISPIALIAIILGDIVVLAVVSLLLYCYFWQNYAAKLKDGKGSKLMESEKIVYSSSPYPVQSGFERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTAYKAVLDDGSVVAVKRLKEAQIGGKKEFEQQMEILGRLRHPNIVNLRAYYFARDEKLLVSDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHSSCKSLKLTHGNVKSTNILLDMAGNARVADFGLSIFAGPTATPKSNGYRAPEALDGRRCTQKSDVYSFGVVLLEILTGKCPSSVDGSGYGGSAMVDLPRWVQSVVREEWTAEVFDLELMRYKDIEDEMVGLLQIALSCTAAAPDQRPSMSHVVKMIEEIRGVEVGPSHDTLDSGSDSPSVSEDAS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5678g00003 663 Gene3D Ribonuclease Inhibitor 86 229 IPR032675 -
Pral5678g00003 663 MobiDBLite consensus disorder prediction 242 273 - -
Pral5678g00003 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 639 IPR046959 -
Pral5678g00003 663 FunFam pollen receptor-like kinase 1 335 437 - -
Pral5678g00003 663 Pfam Protein kinase domain 366 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5678g00003 663 SUPERFAMILY L domain-like 37 205 - -
Pral5678g00003 663 MobiDBLite consensus disorder prediction 642 663 - -
Pral5678g00003 663 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 438 643 - -
Pral5678g00003 663 MobiDBLite consensus disorder prediction 648 663 - -
Pral5678g00003 663 MobiDBLite consensus disorder prediction 235 273 - -
Pral5678g00003 663 CDD STKc_IRAK 368 637 - -
Pral5678g00003 663 Gene3D Phosphorylase Kinase; domain 1 338 437 - -
Pral5678g00003 663 FunFam Nuclear pore complex protein NUP107 25 178 - -
Pral5678g00003 663 Gene3D Ribonuclease Inhibitor 21 85 IPR032675 -
Pral5678g00003 663 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Pral5678g00003 663 Gene3D Transferase(Phosphotransferase) domain 1 438 647 - -
Pral5678g00003 663 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Pral5678g00003 663 ProSiteProfiles Protein kinase domain profile. 362 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5678g00003 663 SUPERFAMILY Protein kinase-like (PK-like) 366 635 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5678g00003 Pral-Chr5678 21361 24420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5678g00003 28 662 Receptor kinase-like Gene Family AT1G68400 66.204 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pral5678g00003 Pkinase 7.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5678g00003 - - qsa:O6P43_032719 1000.73