Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5678g00001 ATGGCGATGCCAGACGGAGCTCTGGCTGTAATAAATGGCACTGTGAACGCGGTTGATTCCTCATCCTCATCTTCCATGACTGGCCTAAAGAAATCGCCTCTGAAATCACCGATTCTGATATTCTCTTTCTTCCATAAAGCTATTCGCTCTGCGCTCGATGGCCTCCATCGAGCCGCCTTGGATTTTGCCACTAACCAGCAAGCTGCTGCCTCTGACATCAAACCCTTGTTCGACCGCTGTCACTTTCTTCGTACCATCTATCAGCATCATTGCAATGCGGAGGATGAGGTCATATTCCCTGCATTAGATATACGTGTAAAGAATGTTGCGCGGACGTACTTCTTGGAGCATGAGGGAGAGAGTCTTCTTTTTGACCAATTGTTCAGGCTGTTAAATTCAAATTTGCTAGAGGAAGAGGGCTGCCGTAGAGAATTAGCTTCTTGTACTGGTGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAGCAGGTCTTCCCCTTGGTTATTGAGAACTTTTCATTTAAAGAGCAGGCGTCACTGGTGTGGCAATTTCTTTGCAGCTTACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCCTTGTATGTATCATCTGATGAACATCAGGATATGCTTAAGTGCTTGTGCTCAGTAATTCCTGAAGAGAAGCTTCTTCAACAGGTTGTCTTTGGATGGATGGAAGGGGTGAAGATTAAATGTAGAAGCTGCATAAATGATACCAAGGCTCACTGTGAGAATGTTGGGATGCATGACTTAACCAGTTGTTCTGAAAAGGTGTATTGTGTCTGTGAAACTTCCAAAACTGGAAAAAGGAAATGGATGGAGCTAAGGGTTGATCATACCACCTCTCATTCATCATGCCCTATAGATGAAATATTACTATGGCATAAGGCCATAAAACAAGAGTTGATTGATTTAACTGAGGCTGTTAGGAAGATACAGCTTTCCGGAAAATTTTCTGATTTGTCTGCGTTTAATGGGAGGTTGCACTTTATTACTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTATAGATGCAGAGCTTTCTTTTCTTGACGAACATGCCGATGAGGAACTTCAGTTTGGCAAGCTTAGATCCCTGATGGAAGGAATTCAGAATGCTGAAGCCAACTCTCCATCTACTGAGGATTACATGAAGTTGAGGTCTCACACTGAACAAATAAAGGCCACCATACTGAAGCACTTTGACAATGAGGAAGCCCAGGTTCTACCGCTTGCACGGAAACATTTTAGCCCCCAACGACAACGAGAATTACTTTATGAAAGTTTGCGCTTAATGCCTTTGAAATTGATCGAATCTGTAATACCGTGGCTGGTCGGATTTCTCAGTGAAGAAGAAGCGAAGTTATTTCTACTGAATATGTATATGGCAGCCCCAACAACAGATTACGCATTAATTACACTGTTTTCTGGTTGGGCATGCAAGACAAAATCCAGGAACGATGGTTCCTTTTCAAGTAAAACAGGTTTGTGTTCTGCAAGGAAACTATCGGATGTAGAAAATAATAGCCCATCATTCTGCCTCTGTGCACCTTCATTCAGTCCCGAGAATAAATACTCATCCATTCAGCAAGATGATTCACGTGGAAGTAGTGGACCAGTCAAATATGGAAAGCTAGAACTGAGGGATAATGATGTGTCTTCCCACGCTGGAACTAAAGAATCTTTTACGTCACCTGATAATCAGATTTGCTGTGTCCCTGGATTAGGGGTAAATGCAAGTCATCTGGGCGCGAATTCATTTGTCCCTGCAAAATCTCTGCGATCCTTGTCTAATGGTTCTGTGCCTTCCCTGAACTCTAGTCTATTTGTCTGGGAAACAGATATAGTCTCTGCTGACAATGGGTTCAAAACGCGACCCATTGATAACATATTTAAATTTCATAAAGCCATTTGTAAAGACTTGGAGCATATAGATGTCGAATCTGGAAAATTATTTGACTGTGATGAAAATTTCCTGAGAAGGTTCACCGGTAGATTTCGCTTGTTGTGGGGTTTGTACAGAGCTCATAGCAATGCTGAGGATGATATAGTATTTCCAGCATTAGAATCAAAAGAAACTCTTCATAATGTGAGCCACTCCTACACTTTGGACCATAAGCAGGAAGAGAAGTTATTTGTAGATATTTCATTTGGACTCTCAGAGCTAACTCAATTACATGAATCCTTGAATAATAAGAATTCATCTGACCATATTACCAGCTTCTACTCTGATTATTCTGGTTGCTCTGATACCATACAAAAATACAATGAGCTAGTTACAAAGATTCAGGGCATGTGCAAGTCTATCAGAGTAACGCTAGATCAACATATCTTTCGTGAGGAACTTGAATTATGGCCACTATTTGACGTTCATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCGTATAATTGGTACTACTGGGGCAGAGGTTCTTCAATCAATGCTGCCATGGGTAACTTCTGCTCTCTCACAAGAGGAGCAAAACAAAATGATGGACACATGGAAGCAGGCTACCAAAAATACCATGTTCAAAGAGTGGCTTAATGAATGGTGGGAAGGGCCCACTTCAATTTCAAACGCGTCCACATCTAGTGACCGTGTTTCACTAGGTGCTGATGCCTTTGACAATTTGGATCAGAATCTTCAAGCTTTCAGGCCCGGGTGGAAAGATATATTCAGGATGAACCAGAATGAACTGGAGTCAGAAATTAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGGAAATCCTATCTCATTCAAAATCTATTGACTAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTAAAGCAACAACAGATGAATTTGGAAATGGAGATTTACTTGAAAGATCACCTTCCTTTCATGATCCAGAGAACAAAATCTTTGGTTGTGAGCATTACAGAAGAAATTGTAAACTCCTTGCTGCTTGCTGTGGAAAGCTATTCTCCTGCAGGTTTTGCCATGACAAAGTCAGTGACCATTCCATGGATAGGAAGGCTACAACTGAGATGATGTGCATGTGCTGCCTGCAATTGCAGCCAATTGGACCAGTTTGTGCAACTCCTTCTTGTGGTGGTCTGTCAATGGCAAAGTACTACTGTAGTATTTGCAAGTTTTTTGATGATGAAAGGTCAGTTTACCATTGCCCTTTCTGCAATATATGCCGTCTGGGGAAAGGACTCGGTGTTGATTCCTTCCATTGCATGCAATGTAATTGTTGCTTGTCAATGCAATTAGTTGACCACCAGTGCCAGGAAAAAAGCTTAGAAACAAACTGCCCCATCTGCTGTGATTTTTTGTTCACATCTAGTACATCTGTCAGAGCTCTTCCTTGTGGCCATTTCATGCATTCCACTTGCTTTCAGGCATATACTTGTAGTCACTACACCTGTCCAATTTGTCGCAAATCTTTGGGAGACATGGCAGTTTATTTTGGCATGCTTGATGCTCTGTTGGCTTCTGAGGAACTCCCTGAGGAATATCAGAATCGCCGTCAGGATATACTATGTAATGATTGCGATAAGAAGGGGACTGCACCATTCCATTGGCTATACCATAAGTGTGGGTTATGCGGATCTTATAATACAAGGGTGATTTAA 3669 0.4178 MAMPDGALAVINGTVNAVDSSSSSSMTGLKKSPLKSPILIFSFFHKAIRSALDGLHRAALDFATNQQAAASDIKPLFDRCHFLRTIYQHHCNAEDEVIFPALDIRVKNVARTYFLEHEGESLLFDQLFRLLNSNLLEEEGCRRELASCTGALRTSISQHMFKEEEQVFPLVIENFSFKEQASLVWQFLCSLPVKMMAEFLPWLALYVSSDEHQDMLKCLCSVIPEEKLLQQVVFGWMEGVKIKCRSCINDTKAHCENVGMHDLTSCSEKVYCVCETSKTGKRKWMELRVDHTTSHSSCPIDEILLWHKAIKQELIDLTEAVRKIQLSGKFSDLSAFNGRLHFITEVCIFHSIAEDKVIFPAIDAELSFLDEHADEELQFGKLRSLMEGIQNAEANSPSTEDYMKLRSHTEQIKATILKHFDNEEAQVLPLARKHFSPQRQRELLYESLRLMPLKLIESVIPWLVGFLSEEEAKLFLLNMYMAAPTTDYALITLFSGWACKTKSRNDGSFSSKTGLCSARKLSDVENNSPSFCLCAPSFSPENKYSSIQQDDSRGSSGPVKYGKLELRDNDVSSHAGTKESFTSPDNQICCVPGLGVNASHLGANSFVPAKSLRSLSNGSVPSLNSSLFVWETDIVSADNGFKTRPIDNIFKFHKAICKDLEHIDVESGKLFDCDENFLRRFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFVDISFGLSELTQLHESLNNKNSSDHITSFYSDYSGCSDTIQKYNELVTKIQGMCKSIRVTLDQHIFREELELWPLFDVHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALSQEEQNKMMDTWKQATKNTMFKEWLNEWWEGPTSISNASTSSDRVSLGADAFDNLDQNLQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKSYLIQNLLTSRWIASQQKSSKATTDEFGNGDLLERSPSFHDPENKIFGCEHYRRNCKLLAACCGKLFSCRFCHDKVSDHSMDRKATTEMMCMCCLQLQPIGPVCATPSCGGLSMAKYYCSICKFFDDERSVYHCPFCNICRLGKGLGVDSFHCMQCNCCLSMQLVDHQCQEKSLETNCPICCDFLFTSSTSVRALPCGHFMHSTCFQAYTCSHYTCPICRKSLGDMAVYFGMLDALLASEELPEEYQNRRQDILCNDCDKKGTAPFHWLYHKCGLCGSYNTRVI 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5678g00001 1222 CDD Hr-like 40 169 - -
Pral5678g00001 1222 FunFam Zinc finger protein BRUTUS 640 870 - -
Pral5678g00001 1222 Gene3D nmb1532 protein domain like 33 189 - -
Pral5678g00001 1222 Gene3D nmb1532 protein domain like 301 446 - -
Pral5678g00001 1222 ProSiteProfiles Zinc finger RING-type profile. 1116 1158 IPR001841 -
Pral5678g00001 1222 Pfam Ring finger domain 1115 1158 IPR001841 -
Pral5678g00001 1222 SUPERFAMILY RING/U-box 1115 1162 - -
Pral5678g00001 1222 Pfam CHY zinc finger 987 1062 IPR008913 GO:0008270
Pral5678g00001 1222 SUPERFAMILY Zinc hairpin stack 1053 1108 IPR037275 -
Pral5678g00001 1222 SUPERFAMILY CHY zinc finger-like 978 1043 IPR037274 GO:0008270
Pral5678g00001 1222 SMART ring_2 1116 1157 IPR001841 -
Pral5678g00001 1222 CDD Hr-like 649 805 - -
Pral5678g00001 1222 Gene3D nmb1532 protein domain like 641 871 - -
Pral5678g00001 1222 Pfam Hemerythrin HHE cation binding domain 299 431 IPR012312 -
Pral5678g00001 1222 Pfam Hemerythrin HHE cation binding domain 45 171 IPR012312 -
Pral5678g00001 1222 CDD Hr-like 301 429 - -
Pral5678g00001 1222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1109 1160 IPR013083 -
Pral5678g00001 1222 ProSiteProfiles Zinc finger CTCHY-type profile. 1052 1115 IPR017921 -
Pral5678g00001 1222 Pfam Zinc-ribbon 1163 1220 IPR039512 -
Pral5678g00001 1222 Gene3D - 1186 1222 - -
Pral5678g00001 1222 FunFam Zinc finger protein-related isoform 1 1111 1160 - -
Pral5678g00001 1222 CDD RING-H2_Pirh2-like 1115 1158 - -
Pral5678g00001 1222 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1222 - -
Pral5678g00001 1222 ProSiteProfiles Zinc finger CHY-type profile. 980 1049 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5678g00001 Pral-Chr5678 3140 12423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5678g00001 36 1222 C2H2 Transcription Factor Family AT3G18290 61.833 0.0 1472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5678g00001 K16276 - qsa:O6P43_032723 1781.53