Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5670g00003 ATGTCCTCTGATTCCGATGCCACCTCCCCCAATTCATCATCTGCGCCTCCACTGCAACTGGACGATCCCCAAATTCGAAGATTGTCTATGCTTCTCCCTCTGCTTCTCAGTTTAGCGCCCCCTCGCCAGGCCCCAGAACTTGATCCTGGTAGCCACCGTGGCCGAGTACGGATCATCGTAGTTGACCCTTCAGCTGGAGCCATGATCGTGATCGAAGGCTCCGGAGATCTCCAATCCGTGCTTCAAGGCCTATCGGTGAAGCCCGGGGTGTTGCCGGCGTCCAAGGATTCGATTCAGGCCATGCCCAGAGTGGTGGTGACCGAAGAAGGCACGGATTGTTCGATCTGCTTGGAAGCTTACGAAGTGGGGGGCGAAGCTAGGGAAATGCCGTGCAAGCATAAATTTCACTCTGGGTGTATTGAGAAGTGGTTAGGGATTCACGGGTCTTGCCCAATCTGCCGATATGCCATGCCGGCGGAGGAGGAAGACATTAGTATCGCCGGCAGCGAGGGCGAGCCAGATGGCGGCGAGAGGAGGGAGAGCGGTGAGGGGTTGGTATCCGTGAGTGTATGGGTGAGGTCCCTGGACGAAGACGATGATGATCCGATGGAAGTGGATTCAGAGTGGGATGATGGATCCGGGGGATCCAATAATGATTCGCGAGAAGAAGGAAATTCAGCAGGGGATGGGGACTCGTTGATGATGGATCAAGAGCCACAAGACATGGAATTCTGA 735 0.5537 MSSDSDATSPNSSSAPPLQLDDPQIRRLSMLLPLLLSLAPPRQAPELDPGSHRGRVRIIVVDPSAGAMIVIEGSGDLQSVLQGLSVKPGVLPASKDSIQAMPRVVVTEEGTDCSICLEAYEVGGEAREMPCKHKFHSGCIEKWLGIHGSCPICRYAMPAEEEDISIAGSEGEPDGGERRESGEGLVSVSVWVRSLDEDDDDPMEVDSEWDDGSGGSNNDSREEGNSAGDGDSLMMDQEPQDMEF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5670g00003 244 Pfam Ring finger domain 112 154 IPR001841 -
Pral5670g00003 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 160 IPR013083 -
Pral5670g00003 244 MobiDBLite consensus disorder prediction 166 244 - -
Pral5670g00003 244 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Pral5670g00003 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 158 - -
Pral5670g00003 244 MobiDBLite consensus disorder prediction 1 22 - -
Pral5670g00003 244 SMART ring_2 113 153 IPR001841 -
Pral5670g00003 244 FunFam E3 ubiquitin-protein ligase RNF181 82 160 - -
Pral5670g00003 244 SUPERFAMILY RING/U-box 107 158 - -
Pral5670g00003 244 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5670g00003 Pral-Chr5670 11823 12771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5670g00003 26 193 C3H Transcription Factor Family AT1G26800 41.765 3.62e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5670g00003 - K11982 qsa:O6P43_004477 164.851