Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5670g00003 | ATGTCCTCTGATTCCGATGCCACCTCCCCCAATTCATCATCTGCGCCTCCACTGCAACTGGACGATCCCCAAATTCGAAGATTGTCTATGCTTCTCCCTCTGCTTCTCAGTTTAGCGCCCCCTCGCCAGGCCCCAGAACTTGATCCTGGTAGCCACCGTGGCCGAGTACGGATCATCGTAGTTGACCCTTCAGCTGGAGCCATGATCGTGATCGAAGGCTCCGGAGATCTCCAATCCGTGCTTCAAGGCCTATCGGTGAAGCCCGGGGTGTTGCCGGCGTCCAAGGATTCGATTCAGGCCATGCCCAGAGTGGTGGTGACCGAAGAAGGCACGGATTGTTCGATCTGCTTGGAAGCTTACGAAGTGGGGGGCGAAGCTAGGGAAATGCCGTGCAAGCATAAATTTCACTCTGGGTGTATTGAGAAGTGGTTAGGGATTCACGGGTCTTGCCCAATCTGCCGATATGCCATGCCGGCGGAGGAGGAAGACATTAGTATCGCCGGCAGCGAGGGCGAGCCAGATGGCGGCGAGAGGAGGGAGAGCGGTGAGGGGTTGGTATCCGTGAGTGTATGGGTGAGGTCCCTGGACGAAGACGATGATGATCCGATGGAAGTGGATTCAGAGTGGGATGATGGATCCGGGGGATCCAATAATGATTCGCGAGAAGAAGGAAATTCAGCAGGGGATGGGGACTCGTTGATGATGGATCAAGAGCCACAAGACATGGAATTCTGA | 735 | 0.5537 | MSSDSDATSPNSSSAPPLQLDDPQIRRLSMLLPLLLSLAPPRQAPELDPGSHRGRVRIIVVDPSAGAMIVIEGSGDLQSVLQGLSVKPGVLPASKDSIQAMPRVVVTEEGTDCSICLEAYEVGGEAREMPCKHKFHSGCIEKWLGIHGSCPICRYAMPAEEEDISIAGSEGEPDGGERRESGEGLVSVSVWVRSLDEDDDDPMEVDSEWDDGSGGSNNDSREEGNSAGDGDSLMMDQEPQDMEF | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5670g00003 | 244 | Pfam | Ring finger domain | 112 | 154 | IPR001841 | - | |
Pral5670g00003 | 244 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 160 | IPR013083 | - | |
Pral5670g00003 | 244 | MobiDBLite | consensus disorder prediction | 166 | 244 | - | - | |
Pral5670g00003 | 244 | ProSiteProfiles | Zinc finger RING-type profile. | 113 | 154 | IPR001841 | - | |
Pral5670g00003 | 244 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 55 | 158 | - | - | |
Pral5670g00003 | 244 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Pral5670g00003 | 244 | SMART | ring_2 | 113 | 153 | IPR001841 | - | |
Pral5670g00003 | 244 | FunFam | E3 ubiquitin-protein ligase RNF181 | 82 | 160 | - | - | |
Pral5670g00003 | 244 | SUPERFAMILY | RING/U-box | 107 | 158 | - | - | |
Pral5670g00003 | 244 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5670g00003 | Pral-Chr5670 | 11823 | 12771 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5670g00003 | 26 | 193 | C3H Transcription Factor Family | AT1G26800 | 41.765 | 3.62e-37 | 128 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5670g00003 | - | K11982 | qsa:O6P43_004477 | 164.851 |