Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5669g00012 ATGCCACCTCCCCCAATTCATCATCTGCGCCTCCACTGCAACTGGACGATCCCCAAATTCGAAGATTGTCTATGCTTCTCCCCTCTGCTTCTCAGTTTAGCGCCCCCTCGCCAGGCCCCAGAACTTGATCCTGGTAGCCACCGTGGCCGAGTACGGATCATCGTAGTTGACCCTTCAGCTGGAGCCATGATCGTGATCGAAGGCTCCGGAGATCTCCAATCCGTGCTTCAAGGCCTATCGGTGAAGCCCGGGGTGTTGCCGGCGTCCAAGGATTCGATTCAGGCCATGCCCAGAGTGGTGGTGACCGAAGAAGGCACGGATTGTTCGATCTGCTTGGAAGCTTACGAAGTGGGGGGCGAAGCTAGGGAAATGCCGTGCAAGCATAAATTTCACTCTGGGTGTATTGAGAAGTGGTTAGGGATTCACGGGTCTTGCCCAATCTGCCGATATGCCATGCCGGCGGAGGAGGAAGACATTAGTATCGCCGGCAGCGAGGGCGAGCCAGATGGCGGCGAGAGGAGGGAGAGCGGTGAGGGGTTTGTATCCGTGAGTGTATGGGTGAGGTCCCTGGACGAAGACGATGATGATCCGATGGAAGTGGATTCAGAGTGGGATGATGGATCCGGGGGATCCAATAATGATTCGCGAGAAGAAGGAAATTCAGCAGGGGATGGGGACTCGTTGATGATGGATCAAGAGCCACAAGACATGGAATTCTGA 720 0.5542 MPPPPIHHLRLHCNWTIPKFEDCLCFSPLLLSLAPPRQAPELDPGSHRGRVRIIVVDPSAGAMIVIEGSGDLQSVLQGLSVKPGVLPASKDSIQAMPRVVVTEEGTDCSICLEAYEVGGEAREMPCKHKFHSGCIEKWLGIHGSCPICRYAMPAEEEDISIAGSEGEPDGGERRESGEGFVSVSVWVRSLDEDDDDPMEVDSEWDDGSGGSNNDSREEGNSAGDGDSLMMDQEPQDMEF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5669g00012 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 155 IPR013083 -
Pral5669g00012 239 ProSiteProfiles Zinc finger RING-type profile. 108 149 IPR001841 -
Pral5669g00012 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 153 - -
Pral5669g00012 239 SUPERFAMILY RING/U-box 102 153 - -
Pral5669g00012 239 Pfam Ring finger domain 107 149 IPR001841 -
Pral5669g00012 239 MobiDBLite consensus disorder prediction 161 239 - -
Pral5669g00012 239 FunFam E3 ubiquitin-protein ligase RNF181 77 155 - -
Pral5669g00012 239 SMART ring_2 108 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5669g00012 Pral-Chr5669 94846 95565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5669g00012 22 188 C3H Transcription Factor Family AT1G26800 41.420 2.31e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5669g00012 - K11982 qsa:O6P43_004477 165.622