Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5669g00004 ATGAGAAGAGTGGCTGAAACCAGCCTGGGGCGCCTTTTTGCTGAAGAAGCCAACCACGTTTCCTTGTATCTTCCTCCACAATATGCCCCACCTTTCTTCCTCTATTTAGCCTCTTCCTTTCACTCTCTCCCCCTTTACTTCATACTTATCTCTTCCCACTTTAACTCCCCCCAAACCTCCTCCTCTTTTCCCGCTCCTTTCTACTATATCTCCTCCCTTCCTTCCTTCCTTCCTCCCCTGCATTTCTCACCTTCAATCCCCCTCCACGACATGGCTTCTCACGCAATTGATCTGCCTCCCGGCTTCAGATTCCACCCCACTGATGAAGAACTCATCGTCCACTACCTCTCTCCCAAGGTCCGCGACCCCTCCTTCTCTGCTCTCGCTATTGCCGACGCCGATTTGAACAAGTCCGAGCCTTGGGATCTTCCCTGGAGGGCCAAAATGGGGGAGAGAGAGAGGTATCTTTTCTGCGTCAGAGACAGGAAATACCCCACCGGGTTGAGAACGAACAGGGCCACCCATGCCGGCTACTGGAAAGCCACCGGCAAAGACAAGGAGATCTTCAAAGCGAAGGCTCTCATCGGCATGAAGAAAACTCTGGTCTTCTACAAAGGCAGGGCCCCCGAAGGTGGAAAAACCAATTGGGTCATGCACGAATATAGACTCCACCCCAATGATCTCCCCTCCAAGAACGAGTGGGTTCTGTGCAGAGTATTTCAGAAGATTAGCAACGGAGGGAGGAAGATGGTGGAGATTGGAGTTGGTCCTGAACTGCCTCCATTAATGGACGCCTCGCCAAATCAAACAGAGTTTGGGGAGTCCTCTCACGTGACCTGCTTCTCCGACCCGATGACCCGGGACGACATAGTGGATAGCCAGGCAGGGAATGCATCATCACAGTTGCCAAATAGCTTTCTGGGTGAAGATGAGCAGGAGATGATGATGATGAGGATGACGACGCTCGAAAACAATGGATGGGGAGAGTTCGATGAAGGAGATATATGCTCTGTGATATATAACAACAACAGCAGCAGCAATGGCATGATTCAGAATCAAGAGTACTCGTCAGCTTCTGCTGGGCCCGTCGACATTGGTTGCCTCTGGAATTACTCCTCTTAG 1122 0.5134 MRRVAETSLGRLFAEEANHVSLYLPPQYAPPFFLYLASSFHSLPLYFILISSHFNSPQTSSSFPAPFYYISSLPSFLPPLHFSPSIPLHDMASHAIDLPPGFRFHPTDEELIVHYLSPKVRDPSFSALAIADADLNKSEPWDLPWRAKMGERERYLFCVRDRKYPTGLRTNRATHAGYWKATGKDKEIFKAKALIGMKKTLVFYKGRAPEGGKTNWVMHEYRLHPNDLPSKNEWVLCRVFQKISNGGRKMVEIGVGPELPPLMDASPNQTEFGESSHVTCFSDPMTRDDIVDSQAGNASSQLPNSFLGEDEQEMMMMRMTTLENNGWGEFDEGDICSVIYNNNSSSNGMIQNQEYSSASAGPVDIGCLWNYSS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5669g00004 373 ProSiteProfiles NAC domain profile. 98 242 IPR003441 GO:0003677|GO:0006355
Pral5669g00004 373 SUPERFAMILY NAC domain 89 242 IPR036093 GO:0003677|GO:0006355
Pral5669g00004 373 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 97 301 - -
Pral5669g00004 373 Pfam No apical meristem (NAM) protein 99 223 IPR003441 GO:0003677|GO:0006355
Pral5669g00004 373 Gene3D NAC domain 107 245 IPR036093 GO:0003677|GO:0006355
Pral5669g00004 373 FunFam NAC domain-containing protein 100-like 107 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5669g00004 Pral-Chr5669 44964 46586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5669g00004 96 371 NAC Transcription Factor Family AT5G39610 53.082 8.63e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5669g00004 NAM 3.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5669g00004 - - pcin:129286920 353.214