Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5669g00003 ATGGGTCGATCACCATGCTGTGACAAGGTGGGCTTAAAGAAAGGACCGTGGACTCCCGAGGAAGATCAGAAACTCCTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGAGCCTTGCCAGCAAAAGCTGGCCTCCAGAGGTGTGGCAAGAGCTGCAGACTGAGGTGGACCAATTATCTTAGGCCTGATATTAAAAGAGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATCCAACTCCATGCTCTACTAGGAAACAGGTGGTCGGCTATAGCCACGCACTTGCCAAAGAGAACAGATAATGAAATCAAGAACTACTGGAATACGCATCTGAAGAAAAGATTAATCCAAATGGGAATTGACCCAGTGACCCACAAACCCAGGAATGAGGCCCTTGTGTCTCGCGACTGTAGCCAATCCAAGACTGCAGCCAACCTTAGCCACATGGCTCAATGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGGTTGGCCGGAGAATCCAAACTACGTTCATCACTATCATTTACACCTTCATCTTCTGCTTCTGCCTCAACTTCAGCTCACCCAGTTCTCAAGCCCTGGAATAATGTCGGGTGGCTGAAATTCACTGATCAAAGCATTAACGGTGGTGGTGACCTTGAATCTCCAAAGTCTACTCTAACTCTCTCTGAGAACACCCCACCTATTATGCCTATGATTGAGTTTGTGGGAACTTCTGGTTCTTGTGAGGCAGCAGGAATGGTGAAAGAAGAAGGTGATCAGCGAGAGTGGAACCACAGTAATGGCTTAGAGAATTCAATGTCTTATGCGTCTAGCCTGCATCATGAGTTGACAATTTCCAACACGGAAGGCACATGGGCCTCTCAAGAGCCTCTTCTCAGGATCGGTACTAGTGGGGATGTTGTTGCTGAGGATCAGGGATTCACCAATCGGCTGCTTAACACAGACTCTGACGATCGGAGCTTGTCAGATGAGGGCGGAGGAGAGTCTAACAATTGGGATGATAGTGACGGTGGTGCTGGCAGTGGCATCTTGTGTGAAGATGATAAGAACTACTGGAACAGCATTCTTAATTTAGTTAACTCTAATTCGCCTTCTCATTCCCCCATGTTCTGA 1119 0.4754 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIQMGIDPVTHKPRNEALVSRDCSQSKTAANLSHMAQWESARLEAEARLAGESKLRSSLSFTPSSSASASTSAHPVLKPWNNVGWLKFTDQSINGGGDLESPKSTLTLSENTPPIMPMIEFVGTSGSCEAAGMVKEEGDQREWNHSNGLENSMSYASSLHHELTISNTEGTWASQEPLLRIGTSGDVVAEDQGFTNRLLNTDSDDRSLSDEGGGESNNWDDSDGGAGSGILCEDDKNYWNSILNLVNSNSPSHSPMF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5669g00003 372 CDD SANT 69 112 IPR001005 -
Pral5669g00003 372 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5669g00003 372 CDD SANT 16 61 IPR001005 -
Pral5669g00003 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Pral5669g00003 372 SMART sant 66 114 IPR001005 -
Pral5669g00003 372 SMART sant 13 63 IPR001005 -
Pral5669g00003 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral5669g00003 372 FunFam MYB-related transcription factor 13 66 - -
Pral5669g00003 372 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral5669g00003 372 Gene3D - 13 66 - -
Pral5669g00003 372 MobiDBLite consensus disorder prediction 309 342 - -
Pral5669g00003 372 FunFam MYB transcription factor 69 116 - -
Pral5669g00003 372 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5669g00003 372 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral5669g00003 372 Gene3D - 69 116 - -
Pral5669g00003 372 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5669g00003 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5669g00003 Pral-Chr5669 28468 31686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5669g00003 1 372 MYB Transcription Factor Family AT3G01140 56.684 6.86e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5669g00003 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5669g00003 K09422 - gmx:100101835 459.144