Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5669g00002 ATGGAGATTCCCTCAGGAATAAGAAAAGGCACGTGGTCTGAAGAAGAAGACGATCTTCTAAGAGCATGCATCCAACGTCACGGTGAAGGAAAATGGCGCCTAGTTCCTCAAAGAGCAGGCTTGAATAGATGCCGGAAAAGTTGTAGACTGAGGTGGATAAACTACTTAAAGCCCGACATCAAGAGAGGAAACTTCACTGAGGATGAAGCTGATATGATAATGAGGTTCCATAGACTCCTGGGAAACAGATGGTCGCTGATTGCTGCGAGGTTTCCTGGAAGAACATCAAATGACGTGAAGAATTACTGGAACACCCACATACGAAAGAAGCTGCGACGGTCTGAGGAGAAACAAGAGACGACCAGCATGATGAAAAGCCACAAAGTAATAAGGCCCCGACCTCTGACTTTGTCCAGAAACTGGTCAAGGCCGAGTAGAGAGGGATTATCATCTGAAGAAGGAGCTGCGAATACTTGTGATAATAATGATACTCATAAAAGTGAACAAAGTAGTTGGAGATCAGACAAGGCTATAATGGCAAGTGATGACAGTGACAGTGAGAATAGGAAGAGTGAGAGTAGTGAAGTGGTGGGGGTAGGTAGGGATTCTTCATCAGAGAATAAGGAGTGGTGGGAGAGTTTATTGCTTGATGACGACGTCATGAACAAAGGCAACAATGAAGAAAGCTTTTGGTGTTTGAGCGCAGAGGAAAACAGCAAATTCCTGGCTCAATTCTGGGACGACGACCAACCACTTGATTTCTTTTCAATATGA 774 0.4457 MEIPSGIRKGTWSEEEDDLLRACIQRHGEGKWRLVPQRAGLNRCRKSCRLRWINYLKPDIKRGNFTEDEADMIMRFHRLLGNRWSLIAARFPGRTSNDVKNYWNTHIRKKLRRSEEKQETTSMMKSHKVIRPRPLTLSRNWSRPSREGLSSEEGAANTCDNNDTHKSEQSSWRSDKAIMASDDSDSENRKSESSEVVGVGRDSSSENKEWWESLLLDDDVMNKGNNEESFWCLSAEENSKFLAQFWDDDQPLDFFSI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5669g00002 257 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Pral5669g00002 257 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Pral5669g00002 257 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Pral5669g00002 257 MobiDBLite consensus disorder prediction 111 126 - -
Pral5669g00002 257 Gene3D - 64 132 - -
Pral5669g00002 257 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Pral5669g00002 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Pral5669g00002 257 MobiDBLite consensus disorder prediction 138 165 - -
Pral5669g00002 257 CDD SANT 64 107 IPR001005 -
Pral5669g00002 257 Gene3D - 9 61 - -
Pral5669g00002 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Pral5669g00002 257 CDD SANT 11 56 IPR001005 -
Pral5669g00002 257 MobiDBLite consensus disorder prediction 111 202 - -
Pral5669g00002 257 MobiDBLite consensus disorder prediction 166 196 - -
Pral5669g00002 257 SMART sant 61 109 IPR001005 -
Pral5669g00002 257 SMART sant 8 58 IPR001005 -
Pral5669g00002 257 FunFam Myb transcription factor 9 61 - -
Pral5669g00002 257 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 213 - -
Pral5669g00002 257 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5669g00002 Pral-Chr5669 19403 20555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5669g00002 2 138 MYB Transcription Factor Family AT1G66370 58.219 1.16e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5669g00002 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5669g00002 - K09422 pcin:129304058 219.935