Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5669g00001 ATGGAGATTCCCTCAGGAGTAAGAATTCCCTCAGGAGTAAGAAAAGGCACGTGGTCTAAAGAAGAAGATGATCTTCTAAGAGCATGCATCCAGCGTTACGGTGAAGGAAAATGGCGCCTAATTCCTCAAAGAGCAGGCTTGAATAGATGCCGGAAAAGTTGTAGACTGAGGTGGATAAACTACTTAAAGCCAGACATCAAGAGAGGAAACTTCACTGAGGATGAAGCTGATATGATAATGAGGTTCCATAGACTCTTGGGAAACAGATGGTCGCTGATTGCTGCGAGGTTTCCTGGAAGAACATCAAATGACGTGAAGAATTACTGGAACACCCACATACGAAAGAAGCTGCGACGGTCTGAGGAGAAACAAGAGACGACCAGCATGATGAAAAGCCACAAAGTGATAAGGCCCCGACCTCTGACTTTGTCCAGAAACTGGTCAAGGCCGAGTAGAGAGGGATTATCTGAAGAAGGAGCTGCGAATACTTGTGATAATAATGATACTCATAAAAGTGAACAAGGTAGTCGGAGATCAGACAAGGCTATAATGGCGAGTGATGATAGTGACAGTAAGAATAAGAAAAGTGAGAGTAGTGAAGTGGCGGGGGCAGGTGGGGATTCTTCAGCAGAGAAGAAGGAGTGGTGGGAAAGTTTGTTGCTTGATGACGACGTCATGAACAAAGGCAACGAAGAAGACAGCTTTTGGTGTTTGGGCGCAGAGGAATTCGCAAATTTCTGGCTCAATTCTGGGACGACGACCAACCACCAACCGCTTGATTTCTTTTCAATATGA 795 0.4528 MEIPSGVRIPSGVRKGTWSKEEDDLLRACIQRYGEGKWRLIPQRAGLNRCRKSCRLRWINYLKPDIKRGNFTEDEADMIMRFHRLLGNRWSLIAARFPGRTSNDVKNYWNTHIRKKLRRSEEKQETTSMMKSHKVIRPRPLTLSRNWSRPSREGLSEEGAANTCDNNDTHKSEQGSRRSDKAIMASDDSDSKNKKSESSEVAGAGGDSSAEKKEWWESLLLDDDVMNKGNEEDSFWCLGAEEFANFWLNSGTTTNHQPLDFFSI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5669g00001 264 MobiDBLite consensus disorder prediction 118 132 - -
Pral5669g00001 264 SMART sant 14 64 IPR001005 -
Pral5669g00001 264 SMART sant 67 115 IPR001005 -
Pral5669g00001 264 FunFam Myb transcription factor 15 67 - -
Pral5669g00001 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 66 IPR017930 -
Pral5669g00001 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Pral5669g00001 264 MobiDBLite consensus disorder prediction 170 197 - -
Pral5669g00001 264 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 218 - -
Pral5669g00001 264 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pral5669g00001 264 Gene3D - 70 138 - -
Pral5669g00001 264 Gene3D - 15 67 - -
Pral5669g00001 264 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pral5669g00001 264 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pral5669g00001 264 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pral5669g00001 264 CDD SANT 70 113 IPR001005 -
Pral5669g00001 264 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral5669g00001 264 MobiDBLite consensus disorder prediction 118 210 - -
Pral5669g00001 264 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5669g00001 Pral-Chr5669 7085 8261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5669g00001 10 247 MYB Transcription Factor Family AT1G66370 41.296 2.86e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5669g00001 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5669g00001 - K09422 pcin:129304058 219.164