Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5666g00005 ATGGCTGAGGTGCTAGACAATGACACTCTTGGGAGGGCCAAGCCTTCCACCGAACAGGATATTTCTGATGAGTTAGATCTTAAAATAAAAAAGTACCTGAGAGGAGAAGGTGCGAATTTGGAGGTTTTGACAGATAAAAAACTGAAGGGCCAACTTTCTGTTAGAGAAGAGTTATATAGCAAATCTGCTAAAGTTGCTGCCAAGGCGGATAAGTGGCTTGTGCCCAGTGAGGGAGGTTATCTAGAGGCTGAAGGCATAGAGAAGACATGGAGGATCAAACAAGAGGCGATAGCTAAAGAAGTAGATATCTTGAGCTCAAGAAACCAATATGATATCATTTTGCCAGAACTTGGCCCGTACACATTGCAGTTTACTTCAAGTGGCCGGTATATGGCTGTTGGAGGGCGTAAGGGCCATTTGGGAATTGTGGACTTGATGAATATGAGTCTAATTAAAGAGTTTCAGGTTAGAGAAACAGTTCGTGATGTGACATTCTTGCATAACGAGCTGTTTTTTGCTGCTGCGCAGAAAAAGTATCTTTACATCTATGACCGTGCTGGCACTGAGCTTCATTGCCTTAAGGAACATGGTTCTGTGTTAAGGCTTCAGTTTCTAAAGAATCACTTCCTTCTGGCTTCAATAAATAAGTTTGGGCAGCTGCATTATCAGGATGTTACGTTGGGTGCAATGGTTGGTAATATTCGAACTGGTTTAGGTCGTACTGATGTGATGCAAGTGAACCCCTTCAATGGGGTTGTTGCTTTGGGTCATTCAGGCGGTAGAGTCACAATGTGGAAGCCAACAAGCTCAGCTCCTCTTGTCAAGATGTTGTGCCATCATGGTCCTCTCTCAGCTCTGGCTTTTCACTCAAATGGCCACTTAATGGCCACAGCTGGAAGAGACAAAAAAATAAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTCCAGACACTACATGGCCATGCCAACACCTTGGATTTTAGTCAAAAAGGATTGCTTGCTTGTGGTACGGGATCTTTTATACAGGTTCTGGGTGATCTTTCTGGTACGCAGAATTATTCAAGGTATATGACTCATTCCATGGTTAAAGGTTACCAAATAGCAAAGTTAATGTTTCGACCATACGAGGATGTTCTTGGCATAGGGCATTCCATGGGTTGGTCCAGCATTCTTATTCCAGGATCGGGAGAACCTAACTTTGATACATGGGTGGCTAATCCATTTGAAACCTCTAAGCAGAGGAGAGAGAAAGAAGTTCGCTCACTGCTGGATAAGCTGCCGCCTGAGACGATCATGTTGGACCCAAGCAAAATTGGTTCAGTAAAGCCTACACGGAGGGAGAAGATGACAAGGATGGAGAGGGAGGCAGAGATAGAAGCTGCTGTTGAAGCTGCCAAGGACATTGAAATGAAGAAAAAAACTAAAGGAAGAAGTAAACCAAGCAAGAAGCTGAAGAAAAAGAAGGAAGCAATTGAGAAAGTGAAGAGGCCTTTCTTGGAAGAAAACATAAAGGAGGAAGCAATTTCCAGAAAGAAACGAAAAATGAGCGAGGAAGTTGGTTTACCAAAATCTTTGAAGAGGTTTGCTGGTAGAAAACCATCAACATGA 1608 0.4316 MAEVLDNDTLGRAKPSTEQDISDELDLKIKKYLRGEGANLEVLTDKKLKGQLSVREELYSKSAKVAAKADKWLVPSEGGYLEAEGIEKTWRIKQEAIAKEVDILSSRNQYDIILPELGPYTLQFTSSGRYMAVGGRKGHLGIVDLMNMSLIKEFQVRETVRDVTFLHNELFFAAAQKKYLYIYDRAGTELHCLKEHGSVLRLQFLKNHFLLASINKFGQLHYQDVTLGAMVGNIRTGLGRTDVMQVNPFNGVVALGHSGGRVTMWKPTSSAPLVKMLCHHGPLSALAFHSNGHLMATAGRDKKIKLWDLRKFEVLQTLHGHANTLDFSQKGLLACGTGSFIQVLGDLSGTQNYSRYMTHSMVKGYQIAKLMFRPYEDVLGIGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGSVKPTRREKMTRMEREAEIEAAVEAAKDIEMKKKTKGRSKPSKKLKKKKEAIEKVKRPFLEENIKEEAISRKKRKMSEEVGLPKSLKRFAGRKPST 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5666g00005 535 PANTHER WD-REPEAT PROTEIN BING4 11 529 IPR040315 -
Pral5666g00005 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Pral5666g00005 535 SMART WD40_4 105 144 IPR001680 GO:0005515
Pral5666g00005 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Pral5666g00005 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Pral5666g00005 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Pral5666g00005 535 MobiDBLite consensus disorder prediction 470 535 - -
Pral5666g00005 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Pral5666g00005 535 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Pral5666g00005 535 FunFam Os01g0183100 protein 185 379 - -
Pral5666g00005 535 SMART BING4CT_2 355 435 IPR012952 -
Pral5666g00005 535 SUPERFAMILY WD40 repeat-like 115 382 IPR036322 GO:0005515
Pral5666g00005 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Pral5666g00005 535 MobiDBLite consensus disorder prediction 485 525 - -
Pral5666g00005 535 Gene3D - 233 348 IPR015943 GO:0005515
Pral5666g00005 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Pral5666g00005 535 Gene3D - 101 226 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5666g00005 Pral-Chr5666 6185 11849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5666g00005 160 331 U-box Gene Family AT2G33340 26.230 2.76e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5666g00005 K14768 - gmx:100786818 837.025