Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5659g00006 ATGTTGTCTCAGATGGTAAGGGGGGGAAAGGTTGGGGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGTTCTGATGATTCGGATGAGGACTATGTGGTTCCAGATGAAGATAGGGATTTATCTGATTGTTCGGAGGATTCAGTATCTTCTTTAGATGGATGTGAATCAGAGGAGAATTTTGATAACTTTGTAGAGGACGAGGAGGAGGAGGAAATTGGAATAAGGAGGAAATTCAATAGATCCAAGACAAAAAATGGCATTTGTGGTCGGCAGAAAATTGGCAGGAAACCCTCACAACAGAGAGGAAGGATAACTTGCTCACATAACCTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAAGAGGAGGATGATGAAGAGACAGATGAATATGAGGAAGATGATGGCGATGAAGATTTTGATTGTGATGAGGATGAGGAATTTACACCTGAGGAAGAAGATTACTCAGACGAAGAAGAAATAAAGGGGAGAAAGAAGAAAAGTAATGGCATTAAAATGGACAAGAAGGTGGGGCAGAAGCGGGCCTCTGTAACTTATACCAGAGGTCGTAAAAGAAGAAGAAATTCTAGGGCGGCAAGGAAGCCCTTGAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAGGAGGAAAGCAAAGTATGATGATGAGGGTGACTTCATAGATAATGGTCGTACCATCAGAACCAAGAGTAAGAAAAAACCAGGACGAAAAAGGAGAAGACTAATTGTTGACTCAGATTCGTACTCAGATTGTGTGTCATCTAGATCATCTGATTATGATTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTATGGAAGTTTGAGAACTAATTTGAGGAGTTCATCCCTTCTGACAAAAAATGAAGAGGATGGAGTCCATGAAGATCTACATCAGCAAAGAAAGCCTCCGGCCCGGAAAGGTAAGGAAAAGATAGAGGAACCTCAGGGAAGAAAGGGCAAGGACAAGGTAGAGGATTTGAAAAGTGAGCCAGGAAAGCAGGTTTGTGGAATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGCTGCACACACTTTTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAAAACAATCAGTAAGCCTGCACGATCAACAACAGCGGGGGTAGATTTGAGAGGATCAGTTATCCAAGTCCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCGTATGAATATGTAATTTGTTCAGAGTGCCATCAAGGTGGAGACGATGGCCTCATGTTACTGTGTGATCTTTGTGACTCTCCTGCGCACACATATTGTGTTGGTCTGGGTCGGGAAGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGCTCTCAAGTTCAGGAAGGTGTGGCTGATTCAAGGGCAACAATAGGTCAGAGCCTACCTGGTAGACCATCGCCTGCTGGACATGCTAGAGATATTATTGACCTCAACTTGATGTCTTCACCACGTGCAGCTTTTAGTCAAGGATTTGGAAATTTTTCTTCTAGATTTTCTGGTAGAAGTGTTGAAGGAGCTTCTCCAGTGTCTGGAGGAGGGGCACCAACTTTATCCGAGAGACGTTGGATACACCGTCAAATTCAACAATTACTTTCAATGGATAGAATGACTTCTGCTCCTGGTCGATCTAATGGCGTTTCAACTACCAATTCAACTAGTAACCTATATGGCTCTCAAAATGATCAAAGTAGGGTAACAACCACTCAAGACACAAGGACACACAACGTGGGAACATCATCATATCACTCATTTTTGGAGGAAAGATTATGCAACAATACCTCTCCACTAATGCAGAATGGGGATCATTTCTCTATGAGAATAAGCAATTCAAGAAGGCCAGTGGTTCAAGATTCAACTCCATTTACCAACAGGTCTTTGAATGGGGCATTTTGGCCTGGTCTTGTGGGAACACCTCCTGTATCAGATTATGAACAAGTCCATCAGCTTAGCAGCAGTTCACACATTGTTGCTGATGGTAGCATGTCCCCTGCTATTAGAGAAGAGAGTAATTTTCACATAGTAAAGGAACAATTGTCATCACTGGTTAAACGCCACCTTATGAGCTTGTCACAAAATATTGATTTAGGCAACAGTACCATCAAGGACATTGCAAGGATTTCTCTGAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGGGCGAGGTTTGCGCTGTGCCCCCTCCTTCAGCCTGTCCCCACATTGAACTAATGGCTGGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCCTTTGTAGGCGACGTGGTTAAGAGGATCATGGACACAAGAATGTCGCAGTGGTTGCGACTAGGCCTTTAG 2541 0.4309 MLSQMVRGGKVGGKRNFRKRVRSKEGGSDDSDEDYVVPDEDRDLSDCSEDSVSSLDGCESEENFDNFVEDEEEEEIGIRRKFNRSKTKNGICGRQKIGRKPSQQRGRITCSHNLEEEEEEEEEEEQEQEQEQEQEQEEEDDEETDEYEEDDGDEDFDCDEDEEFTPEEEDYSDEEEIKGRKKKSNGIKMDKKVGQKRASVTYTRGRKRRRNSRAARKPLRKKRRKNGGLRRKAKYDDEGDFIDNGRTIRTKSKKKPGRKRRRLIVDSDSYSDCVSSRSSDYDYTISEEEREQVREAEELYGSLRTNLRSSSLLTKNEEDGVHEDLHQQRKPPARKGKEKIEEPQGRKGKDKVEDLKSEPGKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADSRATIGQSLPGRPSPAGHARDIIDLNLMSSPRAAFSQGFGNFSSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMTSAPGRSNGVSTTNSTSNLYGSQNDQSRVTTTQDTRTHNVGTSSYHSFLEERLCNNTSPLMQNGDHFSMRISNSRRPVVQDSTPFTNRSLNGAFWPGLVGTPPVSDYEQVHQLSSSSHIVADGSMSPAIREESNFHIVKEQLSSLVKRHLMSLSQNIDLGNSTIKDIARISLNTILAACGLEHKKGEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRIMDTRMSQWLRLGL 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5659g00006 846 MobiDBLite consensus disorder prediction 201 229 - -
Pral5659g00006 846 Coils Coil 286 306 - -
Pral5659g00006 846 SMART ring_2 364 405 IPR001841 -
Pral5659g00006 846 MobiDBLite consensus disorder prediction 1 288 - -
Pral5659g00006 846 MobiDBLite consensus disorder prediction 311 354 - -
Pral5659g00006 846 Pfam Ring finger domain 363 406 IPR001841 -
Pral5659g00006 846 PANTHER F18C1.6 PROTEIN 5 837 - -
Pral5659g00006 846 ProSitePatterns Zinc finger RING-type signature. 383 392 IPR017907 -
Pral5659g00006 846 Pfam PHD-finger 457 503 IPR019787 -
Pral5659g00006 846 ProSiteProfiles Zinc finger PHD-type profile. 455 504 IPR019787 -
Pral5659g00006 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 505 IPR013083 -
Pral5659g00006 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 424 IPR013083 -
Pral5659g00006 846 MobiDBLite consensus disorder prediction 230 250 - -
Pral5659g00006 846 SUPERFAMILY RING/U-box 363 412 - -
Pral5659g00006 846 SMART PHD_3 457 502 IPR001965 -
Pral5659g00006 846 CDD RING-HC_Topors 362 409 - -
Pral5659g00006 846 SUPERFAMILY FYVE/PHD zinc finger 427 503 IPR011011 -
Pral5659g00006 846 Coils Coil 107 150 - -
Pral5659g00006 846 MobiDBLite consensus disorder prediction 315 354 - -
Pral5659g00006 846 ProSiteProfiles Zinc finger RING-type profile. 364 406 IPR001841 -
Pral5659g00006 846 MobiDBLite consensus disorder prediction 32 46 - -
Pral5659g00006 846 MobiDBLite consensus disorder prediction 115 173 - -
Pral5659g00006 846 MobiDBLite consensus disorder prediction 174 197 - -
Pral5659g00006 846 MobiDBLite consensus disorder prediction 601 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5659g00006 Pral-Chr5659 24551 28330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5659g00006 452 501 C2H2 Transcription Factor Family AT3G01460 46.154 3.68e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5659g00006 PHD 3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5659g00006 - - gmx:100791422 916.376