Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5659g00005 ATGGTAAGGGGGGGAAAGGTTGGGGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGTTCTGATGATTCGGATGAGGACTATGTGGTTCCAGATGAAGATAGGGATTTATCTGATTGTTCGGAGGATTCAGTATCTTCTTTAGATGGATGTGAATCAGAGGAGAATTTTGATAACTTTGTAGAGGACGAGGAGGAGGAGGAAATTGGAATAAGGAGGAAATTCAATAGATCCAAGACAAAAAATGGCATTTGTGGTCGGCAGAAAATTGGCAGGAAACCCTCACAACAGAGAGGAAGGATAACTTGCTCACATAACCTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAAGAGGAGGATGATGAAGAGACAGATGAATATGAGGAAGATGATGGCGATGAAGATTTTGATTGTGATGAGGATGAGGAATTTACACCTGAGGAAGAAGATTACTCAGACGAAGAAGAAATAAAGGGGAGAAAGAAGAAAAGTAATGGCATTAAAATGGACAAGAAGGTGGGGCAGAAGCGGGCCTCTGTAACTTATACCAGAGGTCGTAAAAGAAGAAGAAATTCTAGGGCGGCAAGGAAGCCCTTGAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAGGAGGAAAGCAAAGTATGATGATGAGGGTGACTTCATAGATAATGGTCGTACCATCAGAACCAAGAGTAAGAAAAAACCAGGACGAAAAAGGAGAAGACTAATTGTTGACTCAGATTCGTACTCAGATTGTGTGTCATCTAGATCATCTGATTATGATTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTATGGAAGTTTGAGAACTAATTTGAGGAGTTCATCCCTTCTGACAAAAAATGAAGAGGATGGAGTCCATGAAGATCTACATCAGCAAAGAAAGCCTCCGGCCCGGAAAGGTAAGGAAAAGATAGAGGAACCTCAGGGAAGAAAGGGCAAGGACAAGGTAGAGGATTTGAAAAGTGAGCCAGGAAAGCAGGTTTGTGGAATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGCTGCACACACTTTTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAAAACAATCAGTAAGCCTGCACGATCAACAACAGCGGGGGTAGATTTGAGAGGATCAGTTATCCAAGTCCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCGTATGAATATGTAATTTGTTCAGAGTGCCATCAAGGTGGAGACGATGGCCTCATGTTACTGTGTGATCTTTGTGACTCTCCTGCGCACACATATTGTGTTGGTCTGGGTCGGGAAGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGCTCTCAAGTTCAGGAAGGTGTGGCTGATTCAAGGGCAACAATAGGTCAGAGCCTACCTGGTAGACCATCGCCTGCTGGACATGCTAGAGATATTATTGACCTCAACTTGATGTCTTCACCACGTGCAGCTTTTAGTCAAGGATTTGGAAATTTTTCTTCTAGATTTTCTGGTAGAAGTGTTGAAGGAGCTTCTCCAGTGTCTGGAGGAGGGGCACCAACTTTATCCGAGAGACGTTGGATACACCGTCAAATTCAACAATTACTTTCAATGGATAGAATGACTTCTGCTCCTGGTCGATCTAATGGCGTTTCAACTACCAATTCAACTAGTAACCTATATGGCTCTCAAAATGATCAAAGTAGGGTAACAACCACTCAAGACACAAGGACACACAACGTGGGAACATCATCATATCACTCATTTTTGGAGGAAAGATTATGCAACAATACCTCTCCACTAATGCAGAATGGGGATCATTTCTCTATGAGAATAAGCAATTCAAGAAGGCCAGTGGTTCAAGATTCAACTCCATTTACCAACAGGTCTTTGAATGGGGCATTTTGGCCTGGTCTTGTGGGAACACCTCCTGTATCAGATTATGAACAAGTCCATCAGCTTAGCAGCAGTTCACACATTGTTGCTGATGGTAGCATGTCCCCTGCTATTAGAGAAGAGAGTAATTTTCACATAGTAAAGGAACAATTGTCATCACTGGTTAAACGCCACCTTATGAGCTTGTCACAAAATATTGATTTAGGCAACAGTACCATCAAGGACATTGCAAGGATTTCTCTGAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGGGCGAGGTTTGCGCTGTGCCCCCTCCTTCAGCCTGTCCCCACATTGAACTAATGGCTGGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCCTTTGTAGGCGACGTGGTTAAGAGGATCATGGACACAAGAATGTCGCAGTGGTTGCGACTAGGCCTTTAG 2529 0.431 MVRGGKVGGKRNFRKRVRSKEGGSDDSDEDYVVPDEDRDLSDCSEDSVSSLDGCESEENFDNFVEDEEEEEIGIRRKFNRSKTKNGICGRQKIGRKPSQQRGRITCSHNLEEEEEEEEEEEQEQEQEQEQEQEEEDDEETDEYEEDDGDEDFDCDEDEEFTPEEEDYSDEEEIKGRKKKSNGIKMDKKVGQKRASVTYTRGRKRRRNSRAARKPLRKKRRKNGGLRRKAKYDDEGDFIDNGRTIRTKSKKKPGRKRRRLIVDSDSYSDCVSSRSSDYDYTISEEEREQVREAEELYGSLRTNLRSSSLLTKNEEDGVHEDLHQQRKPPARKGKEKIEEPQGRKGKDKVEDLKSEPGKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADSRATIGQSLPGRPSPAGHARDIIDLNLMSSPRAAFSQGFGNFSSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMTSAPGRSNGVSTTNSTSNLYGSQNDQSRVTTTQDTRTHNVGTSSYHSFLEERLCNNTSPLMQNGDHFSMRISNSRRPVVQDSTPFTNRSLNGAFWPGLVGTPPVSDYEQVHQLSSSSHIVADGSMSPAIREESNFHIVKEQLSSLVKRHLMSLSQNIDLGNSTIKDIARISLNTILAACGLEHKKGEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRIMDTRMSQWLRLGL 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5659g00005 842 MobiDBLite consensus disorder prediction 197 225 - -
Pral5659g00005 842 Coils Coil 282 302 - -
Pral5659g00005 842 ProSiteProfiles Zinc finger RING-type profile. 360 402 IPR001841 -
Pral5659g00005 842 Pfam Ring finger domain 359 402 IPR001841 -
Pral5659g00005 842 ProSiteProfiles Zinc finger PHD-type profile. 451 500 IPR019787 -
Pral5659g00005 842 SMART PHD_3 453 498 IPR001965 -
Pral5659g00005 842 MobiDBLite consensus disorder prediction 307 350 - -
Pral5659g00005 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 501 IPR013083 -
Pral5659g00005 842 SMART ring_2 360 401 IPR001841 -
Pral5659g00005 842 SUPERFAMILY FYVE/PHD zinc finger 423 499 IPR011011 -
Pral5659g00005 842 Pfam PHD-finger 453 499 IPR019787 -
Pral5659g00005 842 PANTHER F18C1.6 PROTEIN 1 833 - -
Pral5659g00005 842 MobiDBLite consensus disorder prediction 111 169 - -
Pral5659g00005 842 MobiDBLite consensus disorder prediction 226 246 - -
Pral5659g00005 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 420 IPR013083 -
Pral5659g00005 842 SUPERFAMILY RING/U-box 359 408 - -
Pral5659g00005 842 CDD RING-HC_Topors 358 405 - -
Pral5659g00005 842 ProSitePatterns Zinc finger RING-type signature. 379 388 IPR017907 -
Pral5659g00005 842 MobiDBLite consensus disorder prediction 1 284 - -
Pral5659g00005 842 Coils Coil 103 146 - -
Pral5659g00005 842 MobiDBLite consensus disorder prediction 311 350 - -
Pral5659g00005 842 MobiDBLite consensus disorder prediction 28 42 - -
Pral5659g00005 842 MobiDBLite consensus disorder prediction 170 193 - -
Pral5659g00005 842 MobiDBLite consensus disorder prediction 597 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5659g00005 Pral-Chr5659 24551 28496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5659g00005 448 497 C2H2 Transcription Factor Family AT3G01460 46.154 3.57e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5659g00005 PHD 3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5659g00005 - - gmx:100791422 916.376