Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5657g00055 ATGGACCATGTTTGCAGGTTCAACACTAAGGAATCATCCCGTTCGGAAGATGTCAGAGTTGGTGACGTCTCTTCCTCTTCAGATCAGTTGCATCGAGCTCCGGCTGCTCATCACTACGTACAGCTGGAAGTGCCTGATTCGGAAAGAACCGGCCTTGACGTGCCGGACCAGTTCATCAAGGCCCAAATCGCCAATCACCCTCTTTATCCTAATTTATTATCTGCTTACATTGAATGCCAAAAGGTCGGAGCTCCACCAGAACTGGCGTTTCTTCTGGAAGAAATGAACCGTGAAAATCACCCCATCAGTGCTCAGGGTCAGATTGGGGACGATCCTCAACTTGACGATTTCATGGAATCATACTGTGAAGTTCTTCGGAGATACAAAGACGAGTTGTCCAGGCCCTTCAACGAAGCGACCTTGTTTTTGAGCAATATCGAATCCCAGCTCCACAACCTTTGCAAGGGAACATTAACGACCTCAACGGGATGTCGATCCGAGGACGCAGGTGTGACTTCAGAAGAGGAACTAAGTTGTGGTGAGGTCGAAGGTGTCGAAGGTGCTGGAGCTTGTGGCAGTTGTGAAGCTGATAAAGAGATCAAAGACATGCTTCTTCGTAAGTACAGTGGCTATCTCAGCAATCTCCGGAAGGAGTTCTTGAAGAGAAGGAAAAATGGTAAGCTTCCGAAGGATGCAAGGATGATATTGCTCAATTGGTGGAACACCCACTACAGATGGCCTTATCCCACGGAAGAGGAGAAAGTGAGGCTATCGGAAAGGAGTGGACTGAATCAAAAGCAGATAAATAATTGGTTCATCAACCAGCGGAAACGGCACTGGAAGCCATCTGATGATATGCGATTTGCCGTCTTGGAGGGTGTAAATGGGGCCCCCTTCGGCCCCCCTTTCTGCTTCAACGCTCCTCCTCCACCCCCTCCCCAACCTCATTGA 951 0.49 MDHVCRFNTKESSRSEDVRVGDVSSSSDQLHRAPAAHHYVQLEVPDSERTGLDVPDQFIKAQIANHPLYPNLLSAYIECQKVGAPPELAFLLEEMNRENHPISAQGQIGDDPQLDDFMESYCEVLRRYKDELSRPFNEATLFLSNIESQLHNLCKGTLTTSTGCRSEDAGVTSEEELSCGEVEGVEGAGACGSCEADKEIKDMLLRKYSGYLSNLRKEFLKRRKNGKLPKDARMILLNWWNTHYRWPYPTEEEKVRLSERSGLNQKQINNWFINQRKRHWKPSDDMRFAVLEGVNGAPFGPPFCFNAPPPPPPQPH 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5657g00055 316 SUPERFAMILY Homeodomain-like 221 287 IPR009057 -
Pral5657g00055 316 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Pral5657g00055 316 CDD homeodomain 222 283 IPR001356 GO:0003677
Pral5657g00055 316 SMART HOX_1 221 286 IPR001356 GO:0003677
Pral5657g00055 316 Pfam ELK domain 199 220 IPR005539 GO:0003677
Pral5657g00055 316 Pfam KNOX2 domain 107 154 IPR005541 GO:0003677|GO:0005634
Pral5657g00055 316 SMART KNOX2_2 104 155 IPR005541 GO:0003677|GO:0005634
Pral5657g00055 316 Gene3D - 224 286 - -
Pral5657g00055 316 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Pral5657g00055 316 Pfam KNOX1 domain 59 100 IPR005540 GO:0003677|GO:0005634
Pral5657g00055 316 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 288 - -
Pral5657g00055 316 SMART KNOX1_2 57 101 IPR005540 GO:0003677|GO:0005634
Pral5657g00055 316 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Pral5657g00055 316 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Pral5657g00055 316 SMART ELK_2 199 220 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5657g00055 Pral-Chr5657 262109 265614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5657g00055 19 299 Homeobox Transcription Factor Family AT1G23380 50.347 2.32e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral5657g00055 KNOX2 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5657g00055 - - qsa:O6P43_011033 385.571