Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5657g00032 ATGCCACTGGGGAAATATTACTGCGACTATTGCGACAAGCACATACAGGACACGCCGACAGCTCGTAAACGACATCTTCAAGGGATCCAGCACCTCCGGGCTAAAGCACTCTGGTACGATTCCCTCAAATTTCAAGATCCTAATCAGGTTTATCCCGATGGATTTGTCAAAGGGGTTTGCAATCGCTTTGTCAAAACGGGTTTTTGCCAGTACGGTGATTCTTGCAGGTATGCTCATCCAAGAAACTTGACCAATGCCAACCTTCAAGGGGGAATAATTGATAATATGCAGCCAGCAGCATTAGCAACGGCGGTTAATATGGGTGGTGGAGGCTCTACACCAGGTAAACTAATTGGGGTTGAATTTATGTAG 372 0.4624 MPLGKYYCDYCDKHIQDTPTARKRHLQGIQHLRAKALWYDSLKFQDPNQVYPDGFVKGVCNRFVKTGFCQYGDSCRYAHPRNLTNANLQGGIIDNMQPAALATAVNMGGGGSTPGKLIGVEFM 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5657g00032 123 Gene3D Classic Zinc Finger 3 55 - -
Pral5657g00032 123 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Pral5657g00032 123 FunFam U1 zinc finger family protein 3 57 - -
Pral5657g00032 123 Gene3D - 56 103 - -
Pral5657g00032 123 SUPERFAMILY beta-beta-alpha zinc fingers 4 61 IPR036236 -
Pral5657g00032 123 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Pral5657g00032 123 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 81 IPR000571 GO:0046872
Pral5657g00032 123 Pfam U1 zinc finger 5 37 IPR013085 GO:0008270
Pral5657g00032 123 SUPERFAMILY CCCH zinc finger 58 82 IPR036855 GO:0046872
Pral5657g00032 123 PANTHER NUCLEASE-RELATED 1 92 - -
Pral5657g00032 123 SMART c3hfinal6 54 81 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5657g00032 Pral-Chr5657 135177 136506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5657g00032 51 101 C2H2 Transcription Factor Family AT5G18550 39.216 1.65e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5657g00032 zf-U1 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5657g00032 K13152 - qsa:O6P43_007391 175.252