Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5657g00003 ATGACCAGGAACAAAGTGCCTCTTGCATATCTCCCGAGCGACGCTGCAAGGAAGACAACATATAAGAAAAGGATGAAGGGTCTTGCGAAAAAGGTGAGTGAATTAACCATTCTTTGTGGGATTGAAGCATGTGCCATTGTTTTTAGCCCCTATGAATCTAATCCAAAAGTTTGGCCAAATTCAAGAGGAGCCCAGCAGGTAATCGCAAGGTTCCAAAATGCACCTGCGCCGGATGAAAAAAGGAATTTGAACCAGGAGAGTTTTGCTAGGCAAAGGATTGCCAAAATTAATGCACAACTTGAGAAGCAGCGTGAAGAGAATTGCAAGAAGGTGACAAAGCTAGCTGTATTCCAGTGTGCTGAAGGGAAGAGTATGGGTGACGAGATGATCGTGGATCTTGATGACATTGATCGCTTGACCCAGGAGAACATAAGCAAGATTAAGAATAAGATGGATGAGCTTATTTGA 468 0.4338 MTRNKVPLAYLPSDAARKTTYKKRMKGLAKKVSELTILCGIEACAIVFSPYESNPKVWPNSRGAQQVIARFQNAPAPDEKRNLNQESFARQRIAKINAQLEKQREENCKKVTKLAVFQCAEGKSMGDEMIVDLDDIDRLTQENISKIKNKMDELI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5657g00003 155 PANTHER MADS BOX PROTEIN 3 151 - -
Pral5657g00003 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5657g00003 155 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral5657g00003 155 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pral5657g00003 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 51 IPR002100 GO:0003677|GO:0046983
Pral5657g00003 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5657g00003 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5657g00003 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5657g00003 155 Coils Coil 86 106 - -
Pral5657g00003 155 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Pral5657g00003 155 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Pral5657g00003 155 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5657g00003 Pral-Chr5657 18383 18850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5657g00003 1 154 Type I MADS-box Gene Family AT5G48670 43.590 2.60e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral5657g00003 SRF-TF 4.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5657g00003 - - aew:130779265 164.466